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Commit 94d6b49b authored by kohleman's avatar kohleman
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added 'lane' to header, since IEM 1.9 available 

SVN: 33817
parent 5f4bc820
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deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
+ 6
− 2
View file @ 94d6b49b
...@@ -510,7 +510,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary ...@@ -510,7 +510,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary
len_index2 = int(flowCellDict['INDEXREAD2']) len_index2 = int(flowCellDict['INDEXREAD2'])
if int(flowCellDict['INDEXREAD2']) > 0: if int(flowCellDict['INDEXREAD2']) > 0:
sampleSheetDict[lane + '_' + key] = [key + separator sampleSheetDict[lane + '_' + key] = [
lane + separator
+ key + separator
+ key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + '_' + index2[0:len_index2] + separator + key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + '_' + index2[0:len_index2] + separator
+ separator + separator
+ separator + separator
...@@ -521,7 +523,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary ...@@ -521,7 +523,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary
+ key + separator + key + separator
] ]
else: else:
sampleSheetDict[lane + '_' + key] = [key + separator sampleSheetDict[lane + '_' + key] = [
lane + separator
+ key + separator
+ key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + separator + key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + separator
+ separator + separator
+ separator + separator
......
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