Explore projects

UniversitätSpital Zürich pipeline (Phil Cheng & Mitch Levesque)

This project aims to collect (and possibly implement) ideas how the Renku platform (for analysis workflow and collaboration) and openBIS (data store and management) can be optimised for better interoperability.

Demo of Jupyter notebook for ETH ARDM workshops

This repository contains the components necessary to integrate a JupyterHub installation with openBIS.

PyBIS is a Python3 module to interact with openBIS. This repository contains various Jupyter notebooks that demonstrate the usage of the Python pyBIS module.

Code used to generate results for the publication "Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting"

Material for the containers & pipelines tutorials

Demo of Jupyter notebook for ETH ARDM workshops

small code snippet for IAM automation:

create LDAP groups and IAM personas takes json file as input

Repository of Jupyter notebooks for calcium imaging data analysis with the SIMA image analysis package. These notebooks were developed as part of an eSCT project in collaboration with the group of Shankar Sachidhanandam (University of Bern).

software for EAWAG sensor data ware house.