From 94d6b49bf835c8eb291dea998be80b28c33d5890 Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Mon, 13 Apr 2015 14:17:07 +0000
Subject: [PATCH] added 'lane' to header, since IEM 1.9 available
SVN: 33817
---
.../source/Jython/createSampleSheet_nextseq.py | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
index b8045213b59..dbe898920c4 100644
--- a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
+++ b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
@@ -510,7 +510,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary
len_index2 = int(flowCellDict['INDEXREAD2'])
if int(flowCellDict['INDEXREAD2']) > 0:
- sampleSheetDict[lane + '_' + key] = [key + separator
+ sampleSheetDict[lane + '_' + key] = [
+ lane + separator
+ + key + separator
+ key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + '_' + index2[0:len_index2] + separator
+ separator
+ separator
@@ -521,7 +523,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary
+ key + separator
]
else:
- sampleSheetDict[lane + '_' + key] = [key + separator
+ sampleSheetDict[lane + '_' + key] = [
+ lane + separator
+ + key + separator
+ key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + separator
+ separator
+ separator
--
GitLab