diff --git a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py index b8045213b591fec261edb72bbd5fc874cb41fe3a..dbe898920c496d79082b15bdc8fc59a1ca138c2e 100644 --- a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py +++ b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py @@ -510,7 +510,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary len_index2 = int(flowCellDict['INDEXREAD2']) if int(flowCellDict['INDEXREAD2']) > 0: - sampleSheetDict[lane + '_' + key] = [key + separator + sampleSheetDict[lane + '_' + key] = [ + lane + separator + + key + separator + key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + '_' + index2[0:len_index2] + separator + separator + separator @@ -521,7 +523,9 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary + key + separator ] else: - sampleSheetDict[lane + '_' + key] = [key + separator + sampleSheetDict[lane + '_' + key] = [ + lane + separator + + key + separator + key + '_' + sanitizeString(parentDict[key][configMap['externalSampleName']]) + '_' + index1[0:len_index1] + separator + separator + separator