SVN: 34031

SSDM-1930: Introducing MonitoredIOStreamCopier with unit tests and use it in multi data set archiving.

SVN: 34030

SSDM-1794: Refactoring package structure of jython and jython27 in common. Removing some duplicated classes.

SVN: 33994

SVN: 33976

SVN: 33971

SSDM-1768: monitoring based on rsync progress output if --progress option added to property extra-rsync-params

SVN: 33966

SSDM-1768 ProcessExecutor, IPathCopier and RsyncCopier extended to allow to monitor stdout and stderr during processing.

SVN: 33962

SVN: 33835

SVN: 33824

SSDM-1730: Fix the problem when it was impossible to set tab character as a csv reader delimiter, becuase of the trim method called on a tab character.

SVN: 33805

SVN: 33646

255 can be a recoverable error and is worth to retry to avoid deleting .faulty_paths manually: OTRS Ticket ID 40751

SVN: 33620

SVN: 33579

SSDM-1366: Fixing bug in ExposablePropertyPlaceholderConfigurer: Resolved properties weren't overridden by system properties.

SVN: 33546

SVN: 33512

SVN: 33511

SVN: 33462

SVN: 33457

SVN: 33378

Bug fix in Tar: closeArchiveEntry() put into a finally clause because it should be called in any case.

SVN: 33377

SVN: 33353

SVN: 33192

SVN: 33190

SVN: 33107

SVN: 33074

SVN: 33072

SVN: 33068

SVN: 33065

SSDM-1290 - CKAN - publication webapp bugfixing - added caching of mesh terms in an http session - fix tests

SVN: 32987

SVN: 32982

SVN: 32919

SVN: 32861

SVN: 32781

SVN: 32707

SVN: 32668

SVN: 32600

SVN: 32562

SSDM-946: - Introducing IntensityRescaling.IImageToPixelsConverter in order to handle BioFormat Index16ColorModel in ImageUtil.rescale() if highQuality8Bit is set. This improves conversion of 12/16-bit images to 8-bit images for Nikon ND2 files considerable. It is also used when thumbnails are created.
- ImageChannelUtils: User defined image re-scaling is always done on 8-bit images.
- ImageChannelUtils: Many refactorings to make code better readable.
- System tests adapted and modified.

SVN: 32547

SVN: 32520

SVN: 32517