Added dependencies to eln-lyms Jython APIs libraries to a separate configuration to be used only in the task executeOpenBisDataStore.

Fixed several issues with build.gradle configurations in various modules, so that the project can be configured in any development environment (like IntelliJ IDEA).

SSDM-8342: data source: AbstractEntityWithPermIdDeliverer.getAllEntities() in order to get only those samples which in the requested spaces. This fixes a HTTP timeout bug caused by filtering a huge number of samples where only a few are passing the filter

SSDM-8342: data source: write property values not as CDATA but as escaped characters. log requested spaces.

yesterday (commit eb8af1d1) added runtime dependencies removed because it is very likely that they are the reason why openBIS installation doesn't start up

SSDM-8277: withOrOperator() and withAndOperator() added to EntityTypeSearchCriteria and DataSetFileSearchCriteria. System tests extended.

SSDM-5896: PathInfo and PathInfoTest moved to ch.systemsx.cisd.openbis.dss.generic.shared.dto. DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest fixed.

SSDM-7643: h5ar folder bug fixed: harvester handled these files as normal files because they weren't transmitted completely.

SSDM-7643: harvester: bug fixed: allow list of entity kinds in attribute 'entityKind' of element 'validationPlugin'

SSDM-7643: harvester: number of download streams configurable. data source: default allowed number of streams increased to 50

SSDM-7643: FileTransferServerServlet: can not use IOUtils.copyLarge because apache commons io 2.6 might be hidden because bioformats 5.9.2 has an older version of this library

SSDM-7643: harvester data set registration: some small refoctoring by using new V3 API class DataSetCreation instead of NewExternalData

SSDM-7643: FileTransferServerServlet: back to chunk size 1 MB (40 KB used for testing slipped through)

SSDM-7643: Fixing bug in FileTransferServerServlet: handle files inside HDF5 archives (i.e. .h5ar files)

SSDM-7643: add file path to error message of PathInfoProviderBasedHierarchicalContent.PathInfoNode.getFile()

SSDM-7993: dependency checking: add check on old apache commons lang because bioformats lib has still this old library

SSDM-7493: bug fixed in MasterDataDeliverer: wrong name of description attribute for validation plugins