Fixed several issues with build.gradle configurations in various modules, so...

Fixed several issues with build.gradle configurations in various modules, so that the project can be configured in any development environment (like IntelliJ IDEA).

common/build.gradle

@@ -51,3 +51,11 @@ test {
 testJar {
 	from "source/java/genericCommonContext.xml"
 }
+
+sourceSets {
+	main {
+		resources {
+			srcDirs = ['source/java']
+		}
+	}
+}
\ No newline at end of file

datastore_server/build.gradle

@@ -53,6 +53,11 @@ configurations {
 sourceSets.test.runtimeClasspath = configurations.testRuntimeFirst + configurations.testRuntimeSecond + sourceSets.test.runtimeClasspath
 
 sourceSets {
+	main {
+		resources {
+			srcDirs = ['source/java']
+		}
+	}
 	test {
 		resources {
 			srcDirs = ['source/java']

openbis/build.gradle

@@ -63,6 +63,11 @@ configurations {
 }
 
 sourceSets {
+	main {
+		resources {
+			srcDirs = ['source/java']
+		}
+	}
 	test {
 		resources {
 			srcDirs = ['source/java']
@@ -123,10 +128,13 @@ task executeOpenBisDev(type: JavaExec) {
 	jvmArgs(['-Dpython.path=../libraries/jython/jython-lib', '-Dlog4j.configuration=etc/log.xml',
 			 '-Djavax.net.ssl.trustStore=dist/server/openBIS.keystore',
 			 '-Dorg.mortbay.util.FileResource.checkAliases=false', '-Xmx2048M', '-XX:MaxPermSize=512m', '-ea'])
-	args(['--classes', '../commonbase/targets/classes', '--classes', '../common/targets/classes',
-		  '--classes', '../authentication/targets/classes', '--classes', '../dbmigration/targets/classes',
-		  '--classes', '../openbis-common/targets/classes', '--classes', '../openbis_api/targets/classes',
-		  '--classes', 'targets/classes', '--lib', 'targets/www/lib/', '--port', '8888', 'targets/www'])
+	args(['--classes', '../commonbase/targets/gradle/classes/main', 
+		  '--classes', '../common/targets/gradle/classes/main',
+		  '--classes', '../authentication/targets/gradle/classes/main', 
+		  '--classes', '../dbmigration/targets/gradle/classes/main',
+		  '--classes', '../openbis-common/targets/gradle/classes/main', 
+		  '--classes', '../openbis_api/targets/gradle/classes/main',
+		  '--classes', 'targets/gradle/classes/main', '--lib', 'targets/www/lib/', '--port', '8888', 'targets/www'])
 }
 
 testProjectSamplesEnabled.dependsOn(copyTestData)

openbis_standard_technologies/build.gradle

@@ -115,7 +115,12 @@ dependencies {
 
 }
 
-sourceSets { 
+sourceSets {
+	main {
+		resources {
+			srcDirs = ['source/java']
+		}
+	}
 	test {
 		resources {
 			srcDirs = ['source/java', 'sourceTest/java']

plasmid/build.gradle

@@ -18,7 +18,12 @@ dependencies {
     testCompile project(path: ':datastore_server', configuration: 'tests')
 }
 
-sourceSets { 
+sourceSets {
+    main {
+        resources {
+            srcDirs = ['source/java']
+        }
+    }
     test {
         resources {
             srcDirs = ['source/java']

rtd_phosphonetx/build.gradle

@@ -17,7 +17,12 @@ dependencies {
 	
 }
 
-sourceSets { 
+sourceSets {
+	main {
+		resources {
+			srcDirs = ['source/java']
+		}
+	}
 	test {
 		resources {
 			srcDirs = ['source/java']

screening/build.gradle

@@ -20,7 +20,12 @@ dependencies {
     testCompile project(path: ':datastore_server', configuration: 'tests')
 }
 
-sourceSets { 
+sourceSets {
+    main {
+        resources {
+            srcDirs = ['source/java']
+        }
+    }
     test {
         resources {
             srcDirs = ['source/java']

ui-test/build.gradle

@@ -15,6 +15,9 @@ sourceSets {
         java {
             srcDirs = ['sourceTest/java']
         }
+        resources {
+            srcDirs = ['source/java']
+        }
     }
     test {
         java {