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Commit d9d61a1c authored by Swen Vermeul's avatar Swen Vermeul
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add black format

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pybis/src/python/pybis/definitions.py
+ 169
− 181
View file @ d9d61a1c
......@@ -14,10 +14,10 @@ def openbis_definitions(entity):
"attrs": "code permId description frozen frozenForProjects frozenForSamples registrator registrationDate modificationDate".split(),
"multi": "".split(),
"identifier": "spaceId",
"create": { "@type": "as.dto.space.create.SpaceCreation"},
"update": { "@type": "as.dto.space.update.SpaceUpdate"},
"delete": { "@type": "as.dto.space.delete.SpaceDeletionOptions"},
"fetch": { "@type": "as.dto.space.fetchoptions.SpaceFetchOptions"},
"create": {"@type": "as.dto.space.create.SpaceCreation"},
"update": {"@type": "as.dto.space.update.SpaceUpdate"},
"delete": {"@type": "as.dto.space.delete.SpaceDeletionOptions"},
"fetch": {"@type": "as.dto.space.fetchoptions.SpaceFetchOptions"},
},
"project": {
"attrs_new": "code description space attachments".split(),
......@@ -25,8 +25,8 @@ def openbis_definitions(entity):
"attrs": "code description permId identifier space leader registrator registrationDate modifier modificationDate attachments frozen frozenForExperiments frozenForSamples".split(),
"multi": "".split(),
"identifier": "projectId",
"create": { "@type": "as.dto.project.create.ProjectCreation"},
"update": { "@type": "as.dto.project.update.ProjectUpdate"},
"create": {"@type": "as.dto.project.create.ProjectCreation"},
"update": {"@type": "as.dto.project.update.ProjectUpdate"},
},
"experiment": {
"attrs_new": "code type project tags attachments".split(),
......@@ -34,30 +34,30 @@ def openbis_definitions(entity):
"attrs": "code permId identifier type project tags registrator registrationDate modifier modificationDate attachments frozen frozenForDataSets frozenForSamples".split(),
"multi": "tags attachments".split(),
"identifier": "experimentId",
"create": { "@type": "as.dto.experiment.create.ExperimentCreation"},
"update": { "@type": "as.dto.experiment.update.ExperimentUpdate"},
"create": {"@type": "as.dto.experiment.create.ExperimentCreation"},
"update": {"@type": "as.dto.experiment.update.ExperimentUpdate"},
},
"externalDms": {
"attrs_new": "code label address addressType creationId".split(),
"attrs_up": "label address".split(),
"attrs": "code permId label address addressType urlTemplate".split(),
"identifier": "externalDmsId",
"create": { "@type": "as.dto.externaldms.create.ExternalDmsCreation"},
"update": { "@type": "as.dto.externaldms.update.ExternalDmsUpdate"},
"create": {"@type": "as.dto.externaldms.create.ExternalDmsCreation"},
"update": {"@type": "as.dto.externaldms.update.ExternalDmsUpdate"},
},
"sample": {
"attrs_new": "code type project parents children container components space experiment tags attachments".split(),
"attrs_up": "project parents children container components space experiment tags attachments freeze freezeForComponents freezeForChildren freezeForParents freezeForDataSets".split(),
"attrs": "code permId identifier type project parents children components space experiment tags registrator registrationDate modifier modificationDate attachments container frozen frozenForComponents frozenForChildren frozenForParents frozenForDataSets".split(),
"ids2type": {
'parentIds': {'permId': {'@type': 'as.dto.sample.id.SamplePermId'}},
'childIds': {'permId': {'@type': 'as.dto.sample.id.SamplePermId'}},
'componentIds': {'permId': {'@type': 'as.dto.sample.id.SamplePermId'}},
"parentIds": {"permId": {"@type": "as.dto.sample.id.SamplePermId"}},
"childIds": {"permId": {"@type": "as.dto.sample.id.SamplePermId"}},
"componentIds": {"permId": {"@type": "as.dto.sample.id.SamplePermId"}},
},
"identifier": "sampleId",
"create": { "@type": "as.dto.sample.create.SampleCreation"},
"update": { "@type": "as.dto.sample.update.SampleUpdate"},
"delete": { "@type": "as.dto.sample.delete.SampleDeletionOptions"},
"create": {"@type": "as.dto.sample.create.SampleCreation"},
"update": {"@type": "as.dto.sample.update.SampleUpdate"},
"delete": {"@type": "as.dto.sample.delete.SampleDeletionOptions"},
"cre_type": "as.dto.sample.create.SampleCreation",
"multi": "parents children components tags attachments".split(),
},
......@@ -66,112 +66,79 @@ def openbis_definitions(entity):
"attrs_up": "description autoGeneratedCode generatedCodePrefix subcodeUnique listable showContainer showParents showParentMetadata, validationPlugin".split(),
"attrs": "permId code description autoGeneratedCode generatedCodePrefix subcodeUnique listable showContainer showParents showParentMetadata modificationDate validationPlugin".split(),
"default_attribute_values": {
"autoGeneratedCode" : False,
"generatedCodePrefix" : "S",
"subcodeUnique" : False,
"description" : "",
"listable" : True,
"showContainer" : False,
"showParents" : True,
"showParentMetadata" : False
},
"search": {
"@type": "as.dto.sample.search.SampleTypeSearchCriteria"
},
"create": {
"@type": "as.dto.sample.create.SampleTypeCreation"
},
"update": {
"@type": "as.dto.sample.update.SampleTypeUpdate"
},
"delete": {
"@type": "as.dto.sample.delete.SampleTypeDeletionOptions"
"autoGeneratedCode": False,
"generatedCodePrefix": "S",
"subcodeUnique": False,
"description": "",
"listable": True,
"showContainer": False,
"showParents": True,
"showParentMetadata": False,
},
"search": {"@type": "as.dto.sample.search.SampleTypeSearchCriteria"},
"create": {"@type": "as.dto.sample.create.SampleTypeCreation"},
"update": {"@type": "as.dto.sample.update.SampleTypeUpdate"},
"delete": {"@type": "as.dto.sample.delete.SampleTypeDeletionOptions"},
"identifier": "typeId",
},
"materialType": {
"attrs_new": "code description validationPlugin".split(),
"attrs_up": "description validationPlugin".split(),
"attrs_new": "code description validationPlugin".split(),
"attrs_up": "description validationPlugin".split(),
"attrs": "permId code description validationPlugin".split(),
"search": {
"@type": "as.dto.material.search.MaterialTypeSearchCriteria"
},
"fetch": {
"@type": "as.dto.material.fetchoptions.MaterialTypeFetchOptions"
},
"create": {
"@type": "as.dto.material.create.MaterialTypeCreation"
},
"update": {
"@type": "as.dto.material.update.MaterialTypeUpdate"
},
"delete": {
"@type": "as.dto.material.delete.MaterialTypeDeletionOptions"
},
"search": {"@type": "as.dto.material.search.MaterialTypeSearchCriteria"},
"fetch": {"@type": "as.dto.material.fetchoptions.MaterialTypeFetchOptions"},
"create": {"@type": "as.dto.material.create.MaterialTypeCreation"},
"update": {"@type": "as.dto.material.update.MaterialTypeUpdate"},
"delete": {"@type": "as.dto.material.delete.MaterialTypeDeletionOptions"},
"identifier": "typeId",
},
"dataSetType": {
"attrs_new": "code description mainDataSetPattern mainDataSetPath disallowDeletion validationPlugin".split(),
"attrs_up": "description mainDataSetPattern mainDataSetPath disallowDeletion validationPlugin".split(),
"attrs_new": "code description mainDataSetPattern mainDataSetPath disallowDeletion validationPlugin".split(),
"attrs_up": "description mainDataSetPattern mainDataSetPath disallowDeletion validationPlugin".split(),
"attrs": "permId code description mainDataSetPattern mainDataSetPath disallowDeletion modificationDate validationPlugin".split(),
"search": {
"@type": "as.dto.dataset.search.DataSetTypeSearchCriteria"
},
"fetch": {
"@type": "as.dto.dataset.fetchoptions.DataSetTypeFetchOptions"
},
"create": {
"@type": "as.dto.dataset.create.DataSetTypeCreation"
},
"update": {
"@type": "as.dto.dataset.update.DataSetTypeUpdate"
},
"delete": {
"@type": "as.dto.dataset.delete.DataSetTypeDeletionOptions"
},
"search": {"@type": "as.dto.dataset.search.DataSetTypeSearchCriteria"},
"fetch": {"@type": "as.dto.dataset.fetchoptions.DataSetTypeFetchOptions"},
"create": {"@type": "as.dto.dataset.create.DataSetTypeCreation"},
"update": {"@type": "as.dto.dataset.update.DataSetTypeUpdate"},
"delete": {"@type": "as.dto.dataset.delete.DataSetTypeDeletionOptions"},
"identifier": "typeId",
},
"experimentType": {
"attrs_new": "code description validationPlugin".split(),
"attrs_up": "description modificationDate validationPlugin".split(),
"attrs": "permId code description modificationDate validationPlugin".split(),
"attrs_up": "description modificationDate validationPlugin".split(),
"attrs": "permId code description modificationDate validationPlugin".split(),
"search": {
"@type": "as.dto.experiment.search.ExperimentTypeSearchCriteria"
},
"fetch": {
"@type": "as.dto.experiment.fetchoptions.ExperimentTypeFetchOptions"
},
"create": {
"@type": "as.dto.experiment.create.ExperimentTypeCreation"
},
"update": {
"@type": "as.dto.experiment.update.ExperimentTypeUpdate"
},
"create": {"@type": "as.dto.experiment.create.ExperimentTypeCreation"},
"update": {"@type": "as.dto.experiment.update.ExperimentTypeUpdate"},
"delete": {
"@type": "as.dto.experiment.delete.ExperimentTypeDeletionOptions"
},
"identifier": "typeId",
},
"propertyType": {
"attrs": "code label description managedInternally dataType vocabulary materialType schema transformation semanticAnnotations registrator registrationDate".split(),
"attrs": "code permId label description managedInternally dataType vocabulary materialType schema transformation semanticAnnotations registrator registrationDate metaData".split(),
"attrs_new": "code label description managedInternally dataType vocabulary materialType schema transformation metaData".split(),
"attrs_up": "label description schema transformation metaData".split(),
"search": {
"@type": "as.dto.property.search.PropertyTypeSearchCriteria"
},
"create": {
"@type": "as.dto.property.create.PropertyTypeCreation"
},
"update": {
"@type": "as.dto.property.update.PropertyTypeUpdate"
},
"delete": {
"@type": "as.dto.property.delete.PropertyTypeDeletionOptions"
},
"search": {"@type": "as.dto.property.search.PropertyTypeSearchCriteria"},
"create": {"@type": "as.dto.property.create.PropertyTypeCreation"},
"update": {"@type": "as.dto.property.update.PropertyTypeUpdate"},
"delete": {"@type": "as.dto.property.delete.PropertyTypeDeletionOptions"},
"dataType": [
"INTEGER", "VARCHAR", "MULTILINE_VARCHAR",
"REAL", "TIMESTAMP", "BOOLEAN", "CONTROLLEDVOCABULARY",
"MATERIAL", "HYPERLINK", "XML"
"INTEGER",
"VARCHAR",
"MULTILINE_VARCHAR",
"REAL",
"TIMESTAMP",
"BOOLEAN",
"CONTROLLEDVOCABULARY",
"MATERIAL",
"HYPERLINK",
"XML",
],
"identifier": "typeId",
},
......@@ -180,12 +147,8 @@ def openbis_definitions(entity):
"attrs_up": "entityType propertyType predicateOntologyId predicateOntologyVersion predicateAccessionId descriptorOntologyId descriptorOntologyVersion descriptorAccessionId ".split(),
"attrs": "permId entityType propertyType predicateOntologyId predicateOntologyVersion predicateAccessionId descriptorOntologyId descriptorOntologyVersion descriptorAccessionId creationDate".split(),
"ids2type": {
"propertyTypeId": {
"permId": "as.dto.property.id.PropertyTypePermId"
},
"entityTypeId": {
"permId": "as.dto.entity.id.EntityTypePermId"
},
"propertyTypeId": {"permId": "as.dto.property.id.PropertyTypePermId"},
"entityTypeId": {"permId": "as.dto.entity.id.EntityTypePermId"},
},
"identifier": "permId",
"cre_type": "as.dto.sample.create.SampleCreation",
......@@ -195,12 +158,15 @@ def openbis_definitions(entity):
"attrs_new": "type code kind experiment sample parents children components containers tags".split(),
"attrs_up": "parents children experiment sample components containers tags freeze freezeForChildren freezeForParents freezeForComponents freezeForContainers".split(),
"attrs": "code permId type kind experiment sample parents children components containers tags accessDate dataProducer dataProductionDate registrator registrationDate modifier modificationDate dataStore measured postRegistered frozen frozenForChildren frozenForParents frozenForComponents frozenForContainers".split(),
"ids2type": {
'parentIds': {'permId': {'@type': 'as.dto.dataset.id.DataSetPermId'}},
'childIds': {'permId': {'@type': 'as.dto.dataset.id.DataSetPermId'}},
'componentIds': {'permId': {'@type': 'as.dto.dataset.id.DataSetPermId'}},
'containerIds': {'permId': {'@type': 'as.dto.dataset.id.DataSetPermId'}},
"parentIds": {"permId": {"@type": "as.dto.dataset.id.DataSetPermId"}},
"childIds": {"permId": {"@type": "as.dto.dataset.id.DataSetPermId"}},
"componentIds": {
"permId": {"@type": "as.dto.dataset.id.DataSetPermId"}
},
"containerIds": {
"permId": {"@type": "as.dto.dataset.id.DataSetPermId"}
},
},
"multi": "parents children containers components".split(),
"identifier": "dataSetId",
......@@ -225,11 +191,11 @@ def openbis_definitions(entity):
"attrs": "code description managedInternally chosenFromList urlTemplate registrator registrationDate modifier modificationDate".split(),
"multi": "".split(),
"identifier": "vocabularyId",
"search": { "@type": "as.dto.vocabulary.search.VocabularySearchCriteria" },
"create": { "@type": "as.dto.vocabulary.create.VocabularyCreation"},
"update": { "@type": "as.dto.vocabulary.update.VocabularyUpdate"},
"delete": { "@type": "as.dto.vocabulary.delete.VocabularyDeletionOptions"},
"fetch": { "@type": "as.dto.vocabulary.fetchoptions.VocabularyFetchOptions"},
"search": {"@type": "as.dto.vocabulary.search.VocabularySearchCriteria"},
"create": {"@type": "as.dto.vocabulary.create.VocabularyCreation"},
"update": {"@type": "as.dto.vocabulary.update.VocabularyUpdate"},
"delete": {"@type": "as.dto.vocabulary.delete.VocabularyDeletionOptions"},
"fetch": {"@type": "as.dto.vocabulary.fetchoptions.VocabularyFetchOptions"},
},
"vocabularyTerm": {
"attrs_new": "code vocabularyCode label description official ordinal".split(),
......@@ -237,10 +203,14 @@ def openbis_definitions(entity):
"attrs": "code vocabularyCode label description official ordinal registrator registrationDate modifier modificationDate".split(),
"multi": "".split(),
"identifier": "vocabularyTermId",
"create": { "@type": "as.dto.vocabulary.create.VocabularyTermCreation"},
"update": { "@type": "as.dto.vocabulary.update.VocabularyTermUpdate"},
"delete": { "@type": "as.dto.vocabulary.delete.VocabularyTermDeletionOptions"},
"fetch": { "@type": "as.dto.vocabulary.fetchoptions.VocabularyTermFetchOptions"},
"create": {"@type": "as.dto.vocabulary.create.VocabularyTermCreation"},
"update": {"@type": "as.dto.vocabulary.update.VocabularyTermUpdate"},
"delete": {
"@type": "as.dto.vocabulary.delete.VocabularyTermDeletionOptions"
},
"fetch": {
"@type": "as.dto.vocabulary.fetchoptions.VocabularyTermFetchOptions"
},
},
"plugin": {
"attrs_new": "name description pluginType script available entityKind".split(),
......@@ -248,8 +218,8 @@ def openbis_definitions(entity):
"attrs": "permId name description registrator registrationDate pluginKind entityKinds pluginType script available".split(),
"multi": "".split(),
"identifier": "pluginId",
"pluginType": ['DYNAMIC_PROPERTY', 'MANAGED_PROPERTY', 'ENTITY_VALIDATION'],
"entityKind": ['MATERIAL', 'EXPERIMENT', 'SAMPLE', 'DATA_SET'],
"pluginType": ["DYNAMIC_PROPERTY", "MANAGED_PROPERTY", "ENTITY_VALIDATION"],
"entityKind": ["MATERIAL", "EXPERIMENT", "SAMPLE", "DATA_SET"],
},
"person": {
"attrs_new": "userId space".split(),
......@@ -258,18 +228,25 @@ def openbis_definitions(entity):
"multi": "".split(),
"identifier": "userId",
},
"authorizationGroup" : {
"authorizationGroup": {
"attrs_new": "code description userIds".split(),
"attrs_up": "code description userIds".split(),
"attrs": "permId code description registrator registrationDate modificationDate users".split(),
"multi": "users".split(),
"identifier": "groupId",
},
"roleAssignment" : {
"roleAssignment": {
"attrs": "id user authorizationGroup role roleLevel space project registrator registrationDate".split(),
"attrs_new": "role roleLevel user authorizationGroup role space project".split(),
"attrs_up": "role roleLevel user authorizationGroup role space project".split(),
"role": ['POWER_USER', 'OBSERVER', 'USER', 'DISABLED', 'ADMIN', 'ETL_SERVER']
"role": [
"POWER_USER",
"OBSERVER",
"USER",
"DISABLED",
"ADMIN",
"ETL_SERVER",
],
},
"attr2ids": {
"space": "spaceId",
......@@ -295,20 +272,24 @@ def openbis_definitions(entity):
"description": "description",
"vocabulary": "vocabularyId",
"validationPlugin": "validationPluginId",
"metaData": "metaData",
},
"ids2type": {
'spaceId': {'permId': {'@type': 'as.dto.space.id.SpacePermId'}},
'projectId': {'permId': {'@type': 'as.dto.project.id.ProjectPermId'}},
'experimentId': {'permId': {'@type': 'as.dto.experiment.id.ExperimentPermId'}},
'tagIds': {'code': {'@type': 'as.dto.tag.id.TagCode'}},
"spaceId": {"permId": {"@type": "as.dto.space.id.SpacePermId"}},
"projectId": {"permId": {"@type": "as.dto.project.id.ProjectPermId"}},
"experimentId": {
"permId": {"@type": "as.dto.experiment.id.ExperimentPermId"}
},
"tagIds": {"code": {"@type": "as.dto.tag.id.TagCode"}},
},
"dataSetFile": {
"search": { "@type": "dss.dto.datasetfile.search.DataSetFileSearchCriteria" }
"search": {"@type": "dss.dto.datasetfile.search.DataSetFileSearchCriteria"}
},
}
return entities[entity]
get_definition_for_entity = openbis_definitions # Alias
get_definition_for_entity = openbis_definitions # Alias
fetch_option = {
......@@ -318,20 +299,22 @@ fetch_option = {
"space": {"@type": "as.dto.space.fetchoptions.SpaceFetchOptions"},
},
"person": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"users": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions" },
"user": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions" },
"owner": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions" },
"users": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"user": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"owner": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"registrator": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"modifier": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"leader": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
"authorizationGroup": {"@type": "as.dto.authorizationgroup.fetchoptions.AuthorizationGroupFetchOptions"},
"authorizationGroup": {
"@type": "as.dto.authorizationgroup.fetchoptions.AuthorizationGroupFetchOptions"
},
"experiment": {
"@type": "as.dto.experiment.fetchoptions.ExperimentFetchOptions",
"type": {"@type": "as.dto.experiment.fetchoptions.ExperimentTypeFetchOptions"}
"type": {"@type": "as.dto.experiment.fetchoptions.ExperimentTypeFetchOptions"},
},
"sample": {
"@type": "as.dto.sample.fetchoptions.SampleFetchOptions",
"type": {"@type": "as.dto.sample.fetchoptions.SampleTypeFetchOptions"}
"type": {"@type": "as.dto.sample.fetchoptions.SampleTypeFetchOptions"},
},
"samples": {"@type": "as.dto.sample.fetchoptions.SampleFetchOptions"},
"sampleType": {
......@@ -341,13 +324,11 @@ fetch_option = {
"propertyType": {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions"
},
"plugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"
}
"plugin": {"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"},
},
"validationPlugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions",
}
},
},
"materialType": {
"@type": "as.dto.material.fetchoptions.MaterialTypeFetchOptions",
......@@ -356,13 +337,11 @@ fetch_option = {
"propertyType": {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions",
},
"plugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"
}
"plugin": {"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"},
},
"validationPlugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions",
}
},
},
"dataSetType": {
"@type": "as.dto.dataset.fetchoptions.DataSetTypeFetchOptions",
......@@ -371,13 +350,11 @@ fetch_option = {
"propertyType": {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions",
},
"plugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"
}
"plugin": {"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"},
},
"validationPlugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions",
}
},
},
"experimentType": {
"@type": "as.dto.experiment.fetchoptions.ExperimentTypeFetchOptions",
......@@ -386,19 +363,17 @@ fetch_option = {
"propertyType": {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions",
},
"plugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"
}
},
"plugin": {"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions"},
},
"validationPlugin": {
"@type": "as.dto.plugin.fetchoptions.PluginFetchOptions",
}
},
},
"dataSet": {
"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions",
"type": {"@type": "as.dto.dataset.fetchoptions.DataSetTypeFetchOptions"},
"parents": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
"children": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
"type": {"@type": "as.dto.dataset.fetchoptions.DataSetTypeFetchOptions"},
"parents": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
"children": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
"containers": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
"components": {"@type": "as.dto.dataset.fetchoptions.DataSetFetchOptions"},
},
......@@ -409,8 +384,10 @@ fetch_option = {
},
"physicalData": {"@type": "as.dto.dataset.fetchoptions.PhysicalDataFetchOptions"},
"linkedData": {
"externalDms": {"@type": "as.dto.externaldms.fetchoptions.ExternalDmsFetchOptions"},
"@type": "as.dto.dataset.fetchoptions.LinkedDataFetchOptions"
"externalDms": {
"@type": "as.dto.externaldms.fetchoptions.ExternalDmsFetchOptions"
},
"@type": "as.dto.dataset.fetchoptions.LinkedDataFetchOptions",
},
"roleAssignment": {
"@type": "as.dto.roleassignment.fetchoptions.RoleAssignmentFetchOptions",
......@@ -425,23 +402,21 @@ fetch_option = {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions",
"vocabulary": {
"@type": "as.dto.vocabulary.fetchoptions.VocabularyFetchOptions",
}
}
},
},
},
"propertyType": {
"@type": "as.dto.property.fetchoptions.PropertyTypeFetchOptions",
"vocabulary": {
"@type": "as.dto.vocabulary.fetchoptions.VocabularyFetchOptions"
},
"materialType": {
"@type": "as.dto.material.fetchoptions.MaterialTypeFetchOptions"
"materialType": {
"@type": "as.dto.material.fetchoptions.MaterialTypeFetchOptions"
},
"semanticAnnotations": {
"@type": "as.dto.semanticannotation.fetchoptions.SemanticAnnotationFetchOptions"
},
"registrator": {
"@type": "as.dto.person.fetchoptions.PersonFetchOptions"
},
"registrator": {"@type": "as.dto.person.fetchoptions.PersonFetchOptions"},
},
"semanticAnnotations": {
"@type": "as.dto.semanticannotation.fetchoptions.SemanticAnnotationFetchOptions"
......@@ -451,9 +426,7 @@ fetch_option = {
"attachments": {"@type": "as.dto.attachment.fetchoptions.AttachmentFetchOptions"},
"attachmentsWithContent": {
"@type": "as.dto.attachment.fetchoptions.AttachmentFetchOptions",
"content": {
"@type": "as.dto.common.fetchoptions.EmptyFetchOptions"
},
"content": {"@type": "as.dto.common.fetchoptions.EmptyFetchOptions"},
},
"script": {
"@type": "as.dto.common.fetchoptions.EmptyFetchOptions",
......@@ -464,23 +437,31 @@ fetch_option = {
"vocabulary": {
"@type": "as.dto.vocabulary.fetchoptions.VocabularyFetchOptions",
},
"vocabularyTerm": {"@type": "as.dto.vocabulary.fetchoptions.VocabularyTermFetchOptions"},
"deletedObjects": { "@type": "as.dto.deletion.fetchoptions.DeletedObjectFetchOptions" },
"deletion": { "@type": "as.dto.deletion.fetchoptions.DeletionFetchOptions" },
"externalDms": { "@type": "as.dto.externaldms.fetchoptions.ExternalDmsFetchOptions"},
"dataSetFile": { "@type": "dss.dto.datasetfile.fetchoptions.DataSetFileFetchOptions"},
"vocabularyTerm": {
"@type": "as.dto.vocabulary.fetchoptions.VocabularyTermFetchOptions"
},
"deletedObjects": {
"@type": "as.dto.deletion.fetchoptions.DeletedObjectFetchOptions"
},
"deletion": {"@type": "as.dto.deletion.fetchoptions.DeletionFetchOptions"},
"externalDms": {"@type": "as.dto.externaldms.fetchoptions.ExternalDmsFetchOptions"},
"dataSetFile": {
"@type": "dss.dto.datasetfile.fetchoptions.DataSetFileFetchOptions"
},
}
def get_fetchoption_for_entity(entity):
entity = entity[0].lower() + entity[1:] # make first character lowercase
entity = entity[0].lower() + entity[1:] # make first character lowercase
try:
return fetch_option[entity]
except KeyError as e:
return {}
def get_type_for_entity(entity, action, parents_or_children=''):
def get_type_for_entity(entity, action, parents_or_children=""):
if action not in "create update delete search".split():
raise ValueError('unknown action: {}'.format(action))
raise ValueError("unknown action: {}".format(action))
definition = openbis_definitions(entity)
if action in definition and not parents_or_children:
......@@ -494,22 +475,30 @@ def get_type_for_entity(entity, action, parents_or_children=''):
"delete": "DeletionOptions",
"search": "SearchCriteria",
}
if parents_or_children:
return {
"@type": "as.dto.{}.{}.{}{}{}"
.format(entity.lower(), action, cap_entity, parents_or_children, noun[action])
"@type": "as.dto.{}.{}.{}{}{}".format(
entity.lower(),
action,
cap_entity,
parents_or_children,
noun[action],
)
}
else:
return {
"@type": "as.dto.{}.{}.{}{}"
.format(entity.lower(), action, cap_entity, noun[action])
"@type": "as.dto.{}.{}.{}{}".format(
entity.lower(), action, cap_entity, noun[action]
)
}
def get_fetchoptions(entity, including=None):
if including is None: including = []
including += ['@type']
entity = entity[0].lower() + entity[1:] # make first character lowercase
if including is None:
including = []
including += ["@type"]
entity = entity[0].lower() + entity[1:] # make first character lowercase
fo = {}
for inc in including:
try:
......@@ -525,8 +514,7 @@ def get_method_for_entity(entity, action):
if entity == "vocabulary":
return "{}Vocabularies".format(action)
cap_entity = entity[:1].upper() + entity[1:]
return "{}{}s".format(action, cap_entity)
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