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Commit 9f17684c authored by barillac's avatar barillac
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types and properties relevant to Weis lab added 

SVN: 34197
parent 632f00b4
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plasmid/source/core-plugins/weismigration/1/as/definitions.py
+ 42
− 100
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......@@ -61,109 +61,51 @@ experimentDefinition = [
];
#
# Sample Types
#Sample Types
#
# antibodyDefinition = [
# ["NAME", "General", "Name", DataType.VARCHAR, None, "", None, None, False],
# ["ANITIGEN", "General", "Antigen", DataType.VARCHAR, None, "", None, None, False],
# ["MONOPOLY", "General", "MonoPoly", DataType.VARCHAR, None, "", None, None, False],
# ["SPECIES", "General", "Species", DataType.VARCHAR, None, "", None, None, False],
# ["VENDOR", "General", "Vendor", DataType.VARCHAR, None, "", None, None, False],
# ["WBDIL", "General", "WBDil", DataType.VARCHAR, None, "", None, None, False],
# ["IFDIL", "General", "IFDil", DataType.VARCHAR, None, "", None, None, False],
# ["FORM", "General", "Form", DataType.VARCHAR, None, "", None, None, False],
# ["PRIMARY", "General", "Primary", DataType.VARCHAR, None, "", None, None, False],
# ["SECONDAR", "General", "Secondary", DataType.VARCHAR, None, "", None, None, False],
# ["COUPLED", "General", "Coupled", DataType.VARCHAR, None, "", None, None, False],
# ["BY", "General", "By", DataType.VARCHAR, None, "", None, None, False],
# ["FEATURES", "General", "Features", DataType.VARCHAR, None, "", None, None, False],
# ["FROMNUC", "General", "FromNuc", DataType.INTEGER, None, "", None, None, False],
# ["GROUP", "General", "Group", DataType.VARCHAR, None, "", None, None, False],
# ["LABELS", "General", "Labels", DataType.VARCHAR, None, "", None, None, False],
# ["LIST", "General", "List", DataType.VARCHAR, None, "", None, None, False],
# ["OD", "General", "OD", DataType.REAL, None, "", None, None, False],
# ["RECEIVED_DATE", "General", "Date received", DataType.TIMESTAMP, None, "", None, None, False],
# ["REQUEST_DATE", "General", "Date_requested", DataType.TIMESTAMP, None, "", None, None, False],
# ["SENSE", "General", "Sense", DataType.VARCHAR, None, "", None, None, False],
# ["SEQUENCE", "General", "Sequence", DataType.VARCHAR, None, "", None, None, False],
# ["TEXTSEQUENCE", "General", "TextSequence", DataType.VARCHAR, None, "", None, None, False],
# ["TYPE", "General", "TYPE", DataType.VARCHAR, None, "", None, None, False],
# ["TEXTSEQUENCE", "General", "TextSequence", DataType.VARCHAR, None, "", None, None, False],
# ];
antibodyDefinition = [
["BY", "General", "By", DataType.VARCHAR, None, "", None, None, False],
["NOTES", "General", "Notes", DataType.VARCHAR, None, "", None, None, False],
["RECEIVE_DATE", "General", "ReceiveDate", DataType.TIMESTAMP, None, "", None, None, False],
["REF_NUM", "General", "RefNum", DataType.VARCHAR, None, "", None, None, False],
["REQUEST_DATE", "General", "RequestDate", DataType.TIMESTAMP, None, "", None, None, False],
["TYPE", "General", "Type", DataType.VARCHAR, None, "", None, None, False],
["ANTIGEN", "General", "Antigen", DataType.VARCHAR, None, "", None, None, False],
["NAME", "General", "Name", DataType.VARCHAR, None, "", None, None, False],
["STORAGE_LOCATION", "General", "StorageLocation", DataType.VARCHAR, None, "", None, None, False],
["MONO_POLY", "General", "MonoPoly", DataType.VARCHAR, None, "", None, None, False],
["SPECIES", "General", "Species", DataType.VARCHAR, None, "", None, None, False],
["VENDOR", "General", "Vendor", DataType.VARCHAR, None, "", None, None, False],
["WBDIL", "General", "WBDil", DataType.VARCHAR, None, "", None, None, False],
["IFDIL", "General", "IFDil", DataType.VARCHAR, None, "", None, None, False],
["FORM", "General", "Form", DataType.VARCHAR, None, "", None, None, False],
["PRIMARY", "General", "Primary", DataType.VARCHAR, None, "", None, None, False],
["SECONDARY", "General", "Secondary", DataType.VARCHAR, None, "", None, None, False],
["COUPLED", "General", "Coupled", DataType.VARCHAR, None, "", None, None, False]
["BOX", "General", "Box", DataType.VARCHAR, None, "", None, None, False],
["EMPTY", "General", "empty?", DataType.VARCHAR, None, "", None, None, False],
["CATALOG_NUM", "General", "Catalog#", DataType.VARCHAR, None, "", None, None, False]
];
# strainDefinition = [
# ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None, False],
# ["BACKGROUND", "General", "background", DataType.CONTROLLEDVOCABULARY, "STRAIN_BACKGROUND", "", None, None, False],
# ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False],
# ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False],
# ["CIR", "General", "cir", DataType.CONTROLLEDVOCABULARY, "CIR", "", None, None, False],
# ["CONC_INDUCER1", "General", "conc. inducer 1", DataType.VARCHAR, None, "", None, None, False],
# ["CONC_INDUCER2", "General", "conc. inducer 2", DataType.VARCHAR, None, "", None, None, False],
# ["CONC_INDUCER3", "General", "conc. inducer 3", DataType.VARCHAR, None, "", None, None, False],
# ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None, False],
# ["CONC_UNIT1", "General", "concentration unit 1", DataType.VARCHAR, None, "", None, None, False],
# ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None, False],
# ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
# ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None, False],
# ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False],
# ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False],
# ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None, False],
# ["DERIVATION", "General", "derivation", DataType.CONTROLLEDVOCABULARY, "DERIVATION", "", None, None, False],
# ["EXPRESSED_PROTEIN1", "General", "expressed protein 1", DataType.VARCHAR, None, "", None, None, False],
# ["EXPRESSED_PROTEIN2", "General", "expressed protein 2", DataType.VARCHAR, None, "", None, None, False],
# ["EXPRESSED_PROTEIN3", "General", "expressed protein 3", DataType.VARCHAR, None, "", None, None, False],
# ["FREE_PLASMID", "General", "freeplasmid", DataType.VARCHAR, None, "", None, None, False],
# ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None, False],
# ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False],
# ["GAL", "General", "gal", DataType.CONTROLLEDVOCABULARY, "GAL", "", None, None, False],
# ["GENE_EXPRESSION1", "General", "gene expression 1", DataType.VARCHAR, None, "", None, None, False],
# ["GENE_EXPRESSION2", "General", "gene expression 2", DataType.VARCHAR, None, "", None, None, False],
# ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None, False],
# ["INDUCER1", "General", "inducer 1", DataType.VARCHAR, None, "", None, None, False],
# ["INDUCER2", "General", "inducer 2", DataType.VARCHAR, None, "", None, None, False],
# ["INDUCER3", "General", "inducer 3", DataType.VARCHAR, None, "", None, None, False],
# ["COMMENTS", "General", "info", DataType.VARCHAR, None, "", None, None, False],
# ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
# ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False],
# ["MAT", "General", "mat", DataType.CONTROLLEDVOCABULARY, "MAT", "", None, None, False],
# ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None, False],
# ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None, False],
# ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False],
# ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False],
# ["NUMBER", "General", "number", DataType.VARCHAR, None, "", None, None, False],
# ["STRAIN_OBTAINED_FROM", "General", "obtained from", DataType.VARCHAR, None, "", None, None, False],
# ["ORF", "General", "orf", DataType.VARCHAR, None, "", None, None, False],
# ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False],
# ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None, False],
# ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None, False],
# ["PERSYEASTNUMBER", "General", "persyeastnumber", DataType.INTEGER, None, "", None, None, False],
# ["PETERYEASTNUMBER", "General", "peteryeastnumber", DataType.INTEGER, None, "", None, None, False],
# ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None, False],
# ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None, False],
# ["PLASMID_ID3", "General", "plasmid ID 3", DataType.VARCHAR, None, "", None, None, False],
# ["PROMOTER1", "General", "promoter 1", DataType.VARCHAR, None, "", None, None, False],
# ["PROMOTER2", "General", "promoter 2", DataType.VARCHAR, None, "", None, None, False],
# ["PROMOTER3", "General", "promoter 3", DataType.VARCHAR, None, "", None, None, False],
# ["PUBLISHED_IN", "General", "reference", DataType.VARCHAR, None, "", None, None, False],
# ["SELECTION1", "General", "sel.1", DataType.VARCHAR, None, "", None, None, False],
# ["SELECTION2", "General", "sel.2", DataType.VARCHAR, None, "", None, None, False],
# ["SELECTION3", "General", "sel.3", DataType.VARCHAR, None, "", None, None, False],
# ["SELECTION", "General", "selection", DataType.CONTROLLEDVOCABULARY, "SELECTION_YEAST", "", None, None, False],
# ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False],
# ["STRAIN_SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "STRAIN_SOURCE", "", None, None, False],
# ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None, False],
# ["STRAIN_ID_NR", "General", "strain_id_nr", DataType.VARCHAR, None, "", None, None, False],
# ["NAME", "General", "strain ID", DataType.VARCHAR, None, "", None, None, False],
# ["STRAIN_NAME", "General", "strain name", DataType.VARCHAR, None, "", None, None, False]
# ];
strainDefinition = [
["BASE_STRAIN", "General", "base strain", DataType.VARCHAR, None, "", None, None, False],
["COMMENTS", "General", "comments", DataType.VARCHAR, None, "", None, None, False],
["DATE_ENTERED", "General", "date entered", DataType.TIMESTAMP, None, "", None, None, False],
["DISRUPTIONS", "General", "disruptions", DataType.VARCHAR, None, "", None, None, False],
["FROZEN_STOCK", "General", "frozen stock", DataType.BOOLEAN, None, "", None, None, False],
["GENOTYPE_CONFIRMATION", "General", "genotype confirmation", DataType.VARCHAR, None, "", None, None, False],
["GLYCEROL_STOCK_NUMBER ", "General", "glycerol stock number", DataType.INTEGER, None, "", None, None, False],
["KWY_NUMBER", "General", "KWY number", DataType.VARCHAR, None, "", None, None, False],
["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False],
["MAT", "General", "MAT", DataType.VARCHAR, None, "", None, None, False],
["REMOVED", "General", "removed", DataType.VARCHAR, None, "", None, None, False],
["UNMARKED_MUTATIONS", "General", "unmarked mutations", DataType.VARCHAR, None, "", None, None, False],
["WHO_ENTERED", "General", "who entered", DataType.VARCHAR, None, "", None, None, False]
];
oligoDefinition = [
["AT", "General", "AT%", DataType.INTEGER, None, "", atScriptName, None, False],
......
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