diff --git a/plasmid/source/core-plugins/weismigration/1/as/definitions.py b/plasmid/source/core-plugins/weismigration/1/as/definitions.py index b4c1a541234e1e235b703f08de06604b18bd2c21..6ebef70146ed964d853028dcc45e47d6581f6e54 100644 --- a/plasmid/source/core-plugins/weismigration/1/as/definitions.py +++ b/plasmid/source/core-plugins/weismigration/1/as/definitions.py @@ -61,109 +61,51 @@ experimentDefinition = [ ]; # -# Sample Types +#Sample Types # -# antibodyDefinition = [ -# ["NAME", "General", "Name", DataType.VARCHAR, None, "", None, None, False], -# ["ANITIGEN", "General", "Antigen", DataType.VARCHAR, None, "", None, None, False], -# ["MONOPOLY", "General", "MonoPoly", DataType.VARCHAR, None, "", None, None, False], -# ["SPECIES", "General", "Species", DataType.VARCHAR, None, "", None, None, False], -# ["VENDOR", "General", "Vendor", DataType.VARCHAR, None, "", None, None, False], -# ["WBDIL", "General", "WBDil", DataType.VARCHAR, None, "", None, None, False], -# ["IFDIL", "General", "IFDil", DataType.VARCHAR, None, "", None, None, False], -# ["FORM", "General", "Form", DataType.VARCHAR, None, "", None, None, False], -# ["PRIMARY", "General", "Primary", DataType.VARCHAR, None, "", None, None, False], -# ["SECONDAR", "General", "Secondary", DataType.VARCHAR, None, "", None, None, False], -# ["COUPLED", "General", "Coupled", DataType.VARCHAR, None, "", None, None, False], -# ["BY", "General", "By", DataType.VARCHAR, None, "", None, None, False], -# ["FEATURES", "General", "Features", DataType.VARCHAR, None, "", None, None, False], -# ["FROMNUC", "General", "FromNuc", DataType.INTEGER, None, "", None, None, False], -# ["GROUP", "General", "Group", DataType.VARCHAR, None, "", None, None, False], -# ["LABELS", "General", "Labels", DataType.VARCHAR, None, "", None, None, False], -# ["LIST", "General", "List", DataType.VARCHAR, None, "", None, None, False], -# ["OD", "General", "OD", DataType.REAL, None, "", None, None, False], -# ["RECEIVED_DATE", "General", "Date received", DataType.TIMESTAMP, None, "", None, None, False], -# ["REQUEST_DATE", "General", "Date_requested", DataType.TIMESTAMP, None, "", None, None, False], -# ["SENSE", "General", "Sense", DataType.VARCHAR, None, "", None, None, False], -# ["SEQUENCE", "General", "Sequence", DataType.VARCHAR, None, "", None, None, False], -# ["TEXTSEQUENCE", "General", "TextSequence", DataType.VARCHAR, None, "", None, None, False], -# ["TYPE", "General", "TYPE", DataType.VARCHAR, None, "", None, None, False], -# ["TEXTSEQUENCE", "General", "TextSequence", DataType.VARCHAR, None, "", None, None, False], - - - - - - - -# ]; +antibodyDefinition = [ + ["BY", "General", "By", DataType.VARCHAR, None, "", None, None, False], + ["NOTES", "General", "Notes", DataType.VARCHAR, None, "", None, None, False], + ["RECEIVE_DATE", "General", "ReceiveDate", DataType.TIMESTAMP, None, "", None, None, False], + ["REF_NUM", "General", "RefNum", DataType.VARCHAR, None, "", None, None, False], + ["REQUEST_DATE", "General", "RequestDate", DataType.TIMESTAMP, None, "", None, None, False], + ["TYPE", "General", "Type", DataType.VARCHAR, None, "", None, None, False], + ["ANTIGEN", "General", "Antigen", DataType.VARCHAR, None, "", None, None, False], + ["NAME", "General", "Name", DataType.VARCHAR, None, "", None, None, False], + ["STORAGE_LOCATION", "General", "StorageLocation", DataType.VARCHAR, None, "", None, None, False], + ["MONO_POLY", "General", "MonoPoly", DataType.VARCHAR, None, "", None, None, False], + ["SPECIES", "General", "Species", DataType.VARCHAR, None, "", None, None, False], + ["VENDOR", "General", "Vendor", DataType.VARCHAR, None, "", None, None, False], + ["WBDIL", "General", "WBDil", DataType.VARCHAR, None, "", None, None, False], + ["IFDIL", "General", "IFDil", DataType.VARCHAR, None, "", None, None, False], + ["FORM", "General", "Form", DataType.VARCHAR, None, "", None, None, False], + ["PRIMARY", "General", "Primary", DataType.VARCHAR, None, "", None, None, False], + ["SECONDARY", "General", "Secondary", DataType.VARCHAR, None, "", None, None, False], + ["COUPLED", "General", "Coupled", DataType.VARCHAR, None, "", None, None, False] + ["BOX", "General", "Box", DataType.VARCHAR, None, "", None, None, False], + ["EMPTY", "General", "empty?", DataType.VARCHAR, None, "", None, None, False], + ["CATALOG_NUM", "General", "Catalog#", DataType.VARCHAR, None, "", None, None, False] + + +]; -# strainDefinition = [ -# ["CO2", "General", "%CO2", DataType.CONTROLLEDVOCABULARY, "CO2", "", None, None, False], -# ["BACKGROUND", "General", "background", DataType.CONTROLLEDVOCABULARY, "STRAIN_BACKGROUND", "", None, None, False], -# ["BARCODE", "General", "barcode", DataType.VARCHAR, None, "", None, None, False], -# ["BARCODE_LABEL", "General", "barcode label", DataType.VARCHAR, None, "", None, None, False], -# ["CIR", "General", "cir", DataType.CONTROLLEDVOCABULARY, "CIR", "", None, None, False], -# ["CONC_INDUCER1", "General", "conc. inducer 1", DataType.VARCHAR, None, "", None, None, False], -# ["CONC_INDUCER2", "General", "conc. inducer 2", DataType.VARCHAR, None, "", None, None, False], -# ["CONC_INDUCER3", "General", "conc. inducer 3", DataType.VARCHAR, None, "", None, None, False], -# ["CONC1", "General", "conc.1", DataType.REAL, None, "", None, None, False], -# ["CONC_UNIT1", "General", "concentration unit 1", DataType.VARCHAR, None, "", None, None, False], -# ["CONC2", "General", "conc.2", DataType.REAL, None, "", None, None, False], -# ["CONC_UNIT2", "General", "concentration unit 2", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False], -# ["CONC3", "General", "conc.3", DataType.REAL, None, "", None, None, False], -# ["CONC_UNIT3", "General", "concentration unit 3", DataType.CONTROLLEDVOCABULARY, "CONC_UNITS", "", None, None, False], -# ["CREATION_DATE", "General", "creation date", DataType.TIMESTAMP, None, "", None, None, False], -# ["DATE", "General", "date", DataType.VARCHAR, None, "", None, None, False], -# ["DERIVATION", "General", "derivation", DataType.CONTROLLEDVOCABULARY, "DERIVATION", "", None, None, False], -# ["EXPRESSED_PROTEIN1", "General", "expressed protein 1", DataType.VARCHAR, None, "", None, None, False], -# ["EXPRESSED_PROTEIN2", "General", "expressed protein 2", DataType.VARCHAR, None, "", None, None, False], -# ["EXPRESSED_PROTEIN3", "General", "expressed protein 3", DataType.VARCHAR, None, "", None, None, False], -# ["FREE_PLASMID", "General", "freeplasmid", DataType.VARCHAR, None, "", None, None, False], -# ["FREEZEDATE", "General", "freezedate", DataType.VARCHAR, None, "", None, None, False], -# ["FROZEN", "General", "frozen", DataType.TIMESTAMP, None, "", None, None, False], -# ["GAL", "General", "gal", DataType.CONTROLLEDVOCABULARY, "GAL", "", None, None, False], -# ["GENE_EXPRESSION1", "General", "gene expression 1", DataType.VARCHAR, None, "", None, None, False], -# ["GENE_EXPRESSION2", "General", "gene expression 2", DataType.VARCHAR, None, "", None, None, False], -# ["GROWTH_TEMPERATURE", "General", "growth temperature", DataType.CONTROLLEDVOCABULARY, "GROWTH_TEMPERATURE", "", None, None, False], -# ["INDUCER1", "General", "inducer 1", DataType.VARCHAR, None, "", None, None, False], -# ["INDUCER2", "General", "inducer 2", DataType.VARCHAR, None, "", None, None, False], -# ["INDUCER3", "General", "inducer 3", DataType.VARCHAR, None, "", None, None, False], -# ["COMMENTS", "General", "info", DataType.VARCHAR, None, "", None, None, False], -# ["INVESTIGATOR", "General", "investigator", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False], -# ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False], -# ["MAT", "General", "mat", DataType.CONTROLLEDVOCABULARY, "MAT", "", None, None, False], -# ["MEDIUM", "General", "medium", DataType.CONTROLLEDVOCABULARY, "MEDIUM", "", None, None, False], -# ["MEDIUM_SPECIALS", "General", "medium specials", DataType.VARCHAR, None, "", None, None, False], -# ["MODIFICATION_DATE", "General", "modification date", DataType.TIMESTAMP, None, "", None, None, False], -# ["MODIFIED_BY", "General", "modified by", DataType.CONTROLLEDVOCABULARY, "ALL_LAB_MEMBERS", "", None, None, False], -# ["NUMBER", "General", "number", DataType.VARCHAR, None, "", None, None, False], -# ["STRAIN_OBTAINED_FROM", "General", "obtained from", DataType.VARCHAR, None, "", None, None, False], -# ["ORF", "General", "orf", DataType.VARCHAR, None, "", None, None, False], -# ["PAGE_NUMBER", "General", "page number", DataType.VARCHAR, None, "", None, None, False], -# ["PARENTAL_CELL", "General", "parental cell", DataType.VARCHAR, None, "", None, None, False], -# ["PASSAGE", "General", "passage", DataType.VARCHAR, None, "", None, None, False], -# ["PERSYEASTNUMBER", "General", "persyeastnumber", DataType.INTEGER, None, "", None, None, False], -# ["PETERYEASTNUMBER", "General", "peteryeastnumber", DataType.INTEGER, None, "", None, None, False], -# ["PLASMID_ID1", "General", "plasmid ID 1", DataType.VARCHAR, None, "", None, None, False], -# ["PLASMID_ID2", "General", "plasmid ID 2", DataType.VARCHAR, None, "", None, None, False], -# ["PLASMID_ID3", "General", "plasmid ID 3", DataType.VARCHAR, None, "", None, None, False], -# ["PROMOTER1", "General", "promoter 1", DataType.VARCHAR, None, "", None, None, False], -# ["PROMOTER2", "General", "promoter 2", DataType.VARCHAR, None, "", None, None, False], -# ["PROMOTER3", "General", "promoter 3", DataType.VARCHAR, None, "", None, None, False], -# ["PUBLISHED_IN", "General", "reference", DataType.VARCHAR, None, "", None, None, False], -# ["SELECTION1", "General", "sel.1", DataType.VARCHAR, None, "", None, None, False], -# ["SELECTION2", "General", "sel.2", DataType.VARCHAR, None, "", None, None, False], -# ["SELECTION3", "General", "sel.3", DataType.VARCHAR, None, "", None, None, False], -# ["SELECTION", "General", "selection", DataType.CONTROLLEDVOCABULARY, "SELECTION_YEAST", "", None, None, False], -# ["SERIAL_NUMBER", "General", "serial number", DataType.INTEGER, None, "", None, None, False], -# ["STRAIN_SOURCE", "General", "source", DataType.CONTROLLEDVOCABULARY, "STRAIN_SOURCE", "", None, None, False], -# ["SPECIES", "General", "species", DataType.VARCHAR, None, "", None, None, False], -# ["STRAIN_ID_NR", "General", "strain_id_nr", DataType.VARCHAR, None, "", None, None, False], -# ["NAME", "General", "strain ID", DataType.VARCHAR, None, "", None, None, False], -# ["STRAIN_NAME", "General", "strain name", DataType.VARCHAR, None, "", None, None, False] -# ]; +strainDefinition = [ + ["BASE_STRAIN", "General", "base strain", DataType.VARCHAR, None, "", None, None, False], + ["COMMENTS", "General", "comments", DataType.VARCHAR, None, "", None, None, False], + ["DATE_ENTERED", "General", "date entered", DataType.TIMESTAMP, None, "", None, None, False], + ["DISRUPTIONS", "General", "disruptions", DataType.VARCHAR, None, "", None, None, False], + ["FROZEN_STOCK", "General", "frozen stock", DataType.BOOLEAN, None, "", None, None, False], + ["GENOTYPE_CONFIRMATION", "General", "genotype confirmation", DataType.VARCHAR, None, "", None, None, False], + ["GLYCEROL_STOCK_NUMBER ", "General", "glycerol stock number", DataType.INTEGER, None, "", None, None, False], + ["KWY_NUMBER", "General", "KWY number", DataType.VARCHAR, None, "", None, None, False], + ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False], + ["MAT", "General", "MAT", DataType.VARCHAR, None, "", None, None, False], + ["REMOVED", "General", "removed", DataType.VARCHAR, None, "", None, None, False], + ["UNMARKED_MUTATIONS", "General", "unmarked mutations", DataType.VARCHAR, None, "", None, None, False], + ["WHO_ENTERED", "General", "who entered", DataType.VARCHAR, None, "", None, None, False] + +]; oligoDefinition = [ ["AT", "General", "AT%", DataType.INTEGER, None, "", atScriptName, None, False],