forgotten code

SVN: 20530

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ExperimentViewer.java

@@ -101,7 +101,7 @@ public class ExperimentViewer extends GenericExperimentViewer
     @Override
     protected Component tryCreateLowerLeftComponent()
     {
-        if (viewContext.isSimpleMode())
+        if (viewContext.isSimpleOrEmbeddedMode())
         {
             return null; // no processing in simple view mode
         }

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/RawDataSampleProvider.java

@@ -48,7 +48,7 @@ class RawDataSampleProvider extends AbstractTableModelProvider<Sample>
     }
 
     @Override
-    public TypedTableModel<Sample> createTableModel(int maxSize)
+    public TypedTableModel<Sample> createTableModel()
     {
         List<MsInjectionSample> samples = service.listRawDataSamples(sessionToken);
         TypedTableModelBuilder<Sample> builder = new TypedTableModelBuilder<Sample>();

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/BiologicalSampleProvider.java

@@ -50,7 +50,7 @@ public class BiologicalSampleProvider extends AbstractCommonTableModelProvider<S
     }
 
     @Override
-    protected TypedTableModel<Sample> createTableModel(int maxSize)
+    protected TypedTableModel<Sample> createTableModel()
     {
         DetailedSearchCriteria criteria = new DetailedSearchCriteria();
         criteria.setConnection(SearchCriteriaConnection.MATCH_ALL);

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/DataSetProteinProvider.java

@@ -56,7 +56,7 @@ public class DataSetProteinProvider extends AbstractTableModelProvider<DataSetPr
     }
 
     @Override
-    protected TypedTableModel<DataSetProtein> createTableModel(int maxSize)
+    protected TypedTableModel<DataSetProtein> createTableModel()
     {
         List<DataSetProtein> proteins =
                 server.listProteinsByExperimentAndReference(sessionToken, experimentID,

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ParentlessMsInjectionSampleProvider.java

@@ -49,7 +49,7 @@ public class ParentlessMsInjectionSampleProvider extends AbstractCommonTableMode
     }
 
     @Override
-    protected TypedTableModel<Sample> createTableModel(int maxSize)
+    protected TypedTableModel<Sample> createTableModel()
     {
         DetailedSearchCriteria criteria = new DetailedSearchCriteria();
         criteria.setConnection(SearchCriteriaConnection.MATCH_ALL);

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProvider.java

@@ -49,7 +49,7 @@ public class ProteinSequenceProvider extends AbstractTableModelProvider<ProteinS
     }
 
     @Override
-    protected TypedTableModel<ProteinSequence> createTableModel(int maxSize)
+    protected TypedTableModel<ProteinSequence> createTableModel()
     {
         List<ProteinSequence> sequences =
                 server.listProteinSequencesByProteinReference(sessionToken, proteinReferenceID);

rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProvider.java

@@ -49,7 +49,7 @@ public class ProteinSummaryProvider extends AbstractTableModelProvider<ProteinSu
     }
 
     @Override
-    protected TypedTableModel<ProteinSummary> createTableModel(int maxSize)
+    protected TypedTableModel<ProteinSummary> createTableModel()
     {
         List<ProteinSummary> sumaries = server.listProteinSummariesByExperiment(sessionToken, experimentID);
         TypedTableModelBuilder<ProteinSummary> builder = new TypedTableModelBuilder<ProteinSummary>();

rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProviderTest.java

@@ -52,7 +52,7 @@ public class ProteinSequenceProviderTest extends AbstractProviderTest
         ProteinSequenceProvider provider =
                 new ProteinSequenceProvider(phosphonetxServer, SESSION_TOKEN, new TechId(42));
 
-        TypedTableModel<ProteinSequence> model = provider.createTableModel(Integer.MAX_VALUE);
+        TypedTableModel<ProteinSequence> model = provider.createTableModel();
 
         assertEquals("[SEQUENCE_SHORT_NAME, DATABASE_NAME_AND_VERSION, SEQUENCE]", getHeaderIDs(model).toString());
         assertEquals("[VARCHAR, VARCHAR, VARCHAR]", getHeaderDataTypes(model).toString());

rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProviderTest.java

@@ -51,7 +51,7 @@ public class ProteinSummaryProviderTest extends AbstractProviderTest
         ProteinSummaryProvider provider =
                 new ProteinSummaryProvider(phosphonetxServer, SESSION_TOKEN, new TechId(12));
 
-        TypedTableModel<ProteinSummary> model = provider.createTableModel(Integer.MAX_VALUE);
+        TypedTableModel<ProteinSummary> model = provider.createTableModel();
 
         assertEquals("[FDR, PROTEIN_COUNT, PEPTIDE_COUNT]", getHeaderIDs(model).toString());
         assertEquals("[REAL, INTEGER, INTEGER]", getHeaderDataTypes(model).toString());