diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ExperimentViewer.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ExperimentViewer.java index fcd36620500a17321beb928dd1397a281ac0ddb1..bfde97a096b789985df37c15851c11aabc31afb3 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ExperimentViewer.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ExperimentViewer.java @@ -101,7 +101,7 @@ public class ExperimentViewer extends GenericExperimentViewer @Override protected Component tryCreateLowerLeftComponent() { - if (viewContext.isSimpleMode()) + if (viewContext.isSimpleOrEmbeddedMode()) { return null; // no processing in simple view mode } diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/RawDataSampleProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/RawDataSampleProvider.java index 25bc49a4740f1fdf37c73b19ffad36c9f1c4b078..988402c740106508b9ca560afe4b080af356a7fd 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/RawDataSampleProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/RawDataSampleProvider.java @@ -48,7 +48,7 @@ class RawDataSampleProvider extends AbstractTableModelProvider<Sample> } @Override - public TypedTableModel<Sample> createTableModel(int maxSize) + public TypedTableModel<Sample> createTableModel() { List<MsInjectionSample> samples = service.listRawDataSamples(sessionToken); TypedTableModelBuilder<Sample> builder = new TypedTableModelBuilder<Sample>(); diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/BiologicalSampleProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/BiologicalSampleProvider.java index 9928c97cf7f20ecc3dfb8d8e96a702eb368d7f04..5086c140305f83e9f4e9ede5627bd08883b6be29 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/BiologicalSampleProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/BiologicalSampleProvider.java @@ -50,7 +50,7 @@ public class BiologicalSampleProvider extends AbstractCommonTableModelProvider<S } @Override - protected TypedTableModel<Sample> createTableModel(int maxSize) + protected TypedTableModel<Sample> createTableModel() { DetailedSearchCriteria criteria = new DetailedSearchCriteria(); criteria.setConnection(SearchCriteriaConnection.MATCH_ALL); diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/DataSetProteinProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/DataSetProteinProvider.java index 2520b00ae5b5cfa5214ae6db90892b4819650588..a010b147b0c505c5d0cfb7ead4c66bd98f54a03a 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/DataSetProteinProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/DataSetProteinProvider.java @@ -56,7 +56,7 @@ public class DataSetProteinProvider extends AbstractTableModelProvider<DataSetPr } @Override - protected TypedTableModel<DataSetProtein> createTableModel(int maxSize) + protected TypedTableModel<DataSetProtein> createTableModel() { List<DataSetProtein> proteins = server.listProteinsByExperimentAndReference(sessionToken, experimentID, diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ParentlessMsInjectionSampleProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ParentlessMsInjectionSampleProvider.java index a4be66e7a87c5fa360a6a9efb979bc3abd3ca08d..0d7a9300137667553df05f2b47fd3be7922d3a14 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ParentlessMsInjectionSampleProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ParentlessMsInjectionSampleProvider.java @@ -49,7 +49,7 @@ public class ParentlessMsInjectionSampleProvider extends AbstractCommonTableMode } @Override - protected TypedTableModel<Sample> createTableModel(int maxSize) + protected TypedTableModel<Sample> createTableModel() { DetailedSearchCriteria criteria = new DetailedSearchCriteria(); criteria.setConnection(SearchCriteriaConnection.MATCH_ALL); diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProvider.java index 8ff0de653fc7006393fe902838c230278fe8b5c0..db3a10c0b53d54e834a608f011686bdc8bb4b132 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProvider.java @@ -49,7 +49,7 @@ public class ProteinSequenceProvider extends AbstractTableModelProvider<ProteinS } @Override - protected TypedTableModel<ProteinSequence> createTableModel(int maxSize) + protected TypedTableModel<ProteinSequence> createTableModel() { List<ProteinSequence> sequences = server.listProteinSequencesByProteinReference(sessionToken, proteinReferenceID); diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProvider.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProvider.java index fdb42de4defd2938eb7e53c4d4c6e08d7be5660c..8ad34751b8bace82076182b83d1bceb916d95d34 100644 --- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProvider.java +++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProvider.java @@ -49,7 +49,7 @@ public class ProteinSummaryProvider extends AbstractTableModelProvider<ProteinSu } @Override - protected TypedTableModel<ProteinSummary> createTableModel(int maxSize) + protected TypedTableModel<ProteinSummary> createTableModel() { List<ProteinSummary> sumaries = server.listProteinSummariesByExperiment(sessionToken, experimentID); TypedTableModelBuilder<ProteinSummary> builder = new TypedTableModelBuilder<ProteinSummary>(); diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProviderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProviderTest.java index 85c89b769570e3d0e527def7edbd4ee96c440691..0ba283891da08772ca18efdec4a2088785a1fbf9 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProviderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSequenceProviderTest.java @@ -52,7 +52,7 @@ public class ProteinSequenceProviderTest extends AbstractProviderTest ProteinSequenceProvider provider = new ProteinSequenceProvider(phosphonetxServer, SESSION_TOKEN, new TechId(42)); - TypedTableModel<ProteinSequence> model = provider.createTableModel(Integer.MAX_VALUE); + TypedTableModel<ProteinSequence> model = provider.createTableModel(); assertEquals("[SEQUENCE_SHORT_NAME, DATABASE_NAME_AND_VERSION, SEQUENCE]", getHeaderIDs(model).toString()); assertEquals("[VARCHAR, VARCHAR, VARCHAR]", getHeaderDataTypes(model).toString()); diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProviderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProviderTest.java index e98a8c3b3ea92d793a5f2fb9a01e066d6333865b..8d33570902f0bea7abc435c02557b893d5d7bdf4 100644 --- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProviderTest.java +++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/server/resultset/ProteinSummaryProviderTest.java @@ -51,7 +51,7 @@ public class ProteinSummaryProviderTest extends AbstractProviderTest ProteinSummaryProvider provider = new ProteinSummaryProvider(phosphonetxServer, SESSION_TOKEN, new TechId(12)); - TypedTableModel<ProteinSummary> model = provider.createTableModel(Integer.MAX_VALUE); + TypedTableModel<ProteinSummary> model = provider.createTableModel(); assertEquals("[FDR, PROTEIN_COUNT, PEPTIDE_COUNT]", getHeaderIDs(model).toString()); assertEquals("[REAL, INTEGER, INTEGER]", getHeaderDataTypes(model).toString());