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Commit 829fc6f7 authored by barillac's avatar barillac
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created standard profile with default annotations 

SVN: 32752
parent af55e678
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plasmid/source/core-plugins/newbrowser/1/as/webapps/newbrowser/html/js/config/StandardProfile.js 0 → 100644
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View file @ 829fc6f7
function StandardProfile(serverFacade) {
this.init(serverFacade);
}
$.extend(StandardProfile.prototype, DefaultProfile.prototype, {
init: function(serverFacade){
DefaultProfile.prototype.init.call(this, serverFacade);
this.inventorySpaces = ["INVENTORY"];
this.storagesConfiguration = {
"isEnabled" : true,
/*
* Should be the same across all storages, if not correct behaviour is not guaranteed.
*/
"STORAGE_PROPERTIES": [{
"STORAGE_PROPERTY_GROUP" : "Storage Utility", //Where the storage will be painted.
"STORAGE_GROUP_DISPLAY_NAME" : "Storage Utility", //Storage Group Name
"NAME_PROPERTY" : "FREEZER_NAME", //Should be a Vocabulary.
"ROW_PROPERTY" : "ROW", //Should be an integer.
"COLUMN_PROPERTY" : "COLUMN", //Should be an integer.
"BOX_PROPERTY" : "BOX_NUMBER", //Should be text.
"USER_PROPERTY" : "USER_PROPERTY" //Should be text.
}],
/*
* Storages map, can hold configurations for several storages.
*/
"STORAGE_CONFIGS": {
"MINUS80_1" : { //Freezer name given by the NAME_PROPERTY
"ROW_NUM" : 9, //Number of rows
"COLUMN_NUM" : 9, //Number of columns
"BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
},
"MINUS80_2" : { //Freezer name given by the NAME_PROPERTY
"ROW_NUM" : 9, //Number of rows
"COLUMN_NUM" : 9, //Number of columns
"BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
},
"MINUS820_1" : { //Freezer name given by the NAME_PROPERTY
"ROW_NUM" : 9, //Number of rows
"COLUMN_NUM" : 9, //Number of columns
"BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
},
"BENCH" : { //Freezer name given by the NAME_PROPERTY
"ROW_NUM" : 1, //Number of rows
"COLUMN_NUM" : 1, //Number of columns
"BOX_NUM" : 99999 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
}
}
};
/* New Sample definition tests*/
this.sampleTypeDefinitionsExtension = {
"MEDIA" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Media",
"TYPE": "MEDIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"SOLUTION_BUFFER" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Media",
"TYPE": "MEDIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"GENERAL_PROTOCOL" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Media",
"TYPE": "MEDIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Enzyme",
"TYPE": "ENZYME",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "General protocol",
"TYPE": "GENERAL_PROTOCOL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"PCR_PROTOCOL" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Enzyme",
"TYPE": "ENZYME",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
],
},
"WESTERN_BLOTTING_PROTOCOL" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Antibody",
"TYPE": "ANTIBODY",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
],
},
"PLASMID" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"BACTERIA" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Bacteria parents",
"TYPE": "BACTERIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"YEAST" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Yeast parents",
"TYPE": "YEAST",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"CELL_LINE" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Parental cell line",
"TYPE": "CELL_LINE",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Parental fly",
"TYPE": "FLY",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"FLY" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Fly parents",
"TYPE": "FLY",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
},
"EXPERIMENTAL_STEP" : {
"SAMPLE_PARENTS_HINT" : [
{
"LABEL" : "Antibody",
"TYPE": "ANTIBODY",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Bacteria",
"TYPE": "BACTERIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Cell line",
"TYPE": "CELL_LINE",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Chemical",
"TYPE": "CHEMICAL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Enzyme",
"TYPE": "ENZYME",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Fly",
"TYPE": "FLY",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Media",
"TYPE": "MEDIA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Oligo",
"TYPE": "OLIGO",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Plasmid",
"TYPE": "PLASMID",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "RNA",
"TYPE": "RNA",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Solution/Buffer",
"TYPE": "SOLUTION_BUFFER",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Yeast",
"TYPE": "YEAST",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "General protocol",
"TYPE": "GENERAL_PROTOCOL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "PCR protocol",
"TYPE": "PCR_PROTOCOL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
},
{
"LABEL" : "Western blotting protocol",
"TYPE": "WESTERN_BLOTTING_PROTOCOL",
"MIN_COUNT" : 0,
"ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
}
],
}
}
//The properties you want to appear on the tables, if you don«t specify the list, all of them will appear by default.
this.typePropertiesForTable = {};
//The colors for the notes, if you don«t specify the color, light yellow will be used by default.
this.colorForInspectors = {};
this.sampleFormContentExtra = function(sampleTypeCode, sample, containerId) {
if(sampleTypeCode === "EXPERIMENTAL_STEP") {
var isEnabled = mainController.currentView._sampleFormModel.mode !== FormMode.VIEW;
var freeFormTableController = new FreeFormTableController(sample, isEnabled);
freeFormTableController.init($("#" + containerId));
}
}
}
});
\ No newline at end of file
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