From 829fc6f7fbdfd83fcee4748d5087eabb68a826d9 Mon Sep 17 00:00:00 2001
From: barillac <barillac>
Date: Fri, 7 Nov 2014 09:54:45 +0000
Subject: [PATCH] created standard profile with default annotations
SVN: 32752
---
.../html/js/config/StandardProfile.js | 381 ++++++++++++++++++
1 file changed, 381 insertions(+)
create mode 100644 plasmid/source/core-plugins/newbrowser/1/as/webapps/newbrowser/html/js/config/StandardProfile.js
diff --git a/plasmid/source/core-plugins/newbrowser/1/as/webapps/newbrowser/html/js/config/StandardProfile.js b/plasmid/source/core-plugins/newbrowser/1/as/webapps/newbrowser/html/js/config/StandardProfile.js
new file mode 100644
index 00000000000..2b2f0d800b8
--- /dev/null
+++ b/plasmid/source/core-plugins/newbrowser/1/as/webapps/newbrowser/html/js/config/StandardProfile.js
@@ -0,0 +1,381 @@
+
+function StandardProfile(serverFacade) {
+ this.init(serverFacade);
+}
+
+$.extend(StandardProfile.prototype, DefaultProfile.prototype, {
+ init: function(serverFacade){
+ DefaultProfile.prototype.init.call(this, serverFacade);
+
+ this.inventorySpaces = ["INVENTORY"];
+
+ this.storagesConfiguration = {
+ "isEnabled" : true,
+ /*
+ * Should be the same across all storages, if not correct behaviour is not guaranteed.
+ */
+ "STORAGE_PROPERTIES": [{
+ "STORAGE_PROPERTY_GROUP" : "Storage Utility", //Where the storage will be painted.
+ "STORAGE_GROUP_DISPLAY_NAME" : "Storage Utility", //Storage Group Name
+ "NAME_PROPERTY" : "FREEZER_NAME", //Should be a Vocabulary.
+ "ROW_PROPERTY" : "ROW", //Should be an integer.
+ "COLUMN_PROPERTY" : "COLUMN", //Should be an integer.
+ "BOX_PROPERTY" : "BOX_NUMBER", //Should be text.
+ "USER_PROPERTY" : "USER_PROPERTY" //Should be text.
+ }],
+ /*
+ * Storages map, can hold configurations for several storages.
+ */
+ "STORAGE_CONFIGS": {
+ "MINUS80_1" : { //Freezer name given by the NAME_PROPERTY
+ "ROW_NUM" : 9, //Number of rows
+ "COLUMN_NUM" : 9, //Number of columns
+ "BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
+ },
+ "MINUS80_2" : { //Freezer name given by the NAME_PROPERTY
+ "ROW_NUM" : 9, //Number of rows
+ "COLUMN_NUM" : 9, //Number of columns
+ "BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
+ },
+ "MINUS820_1" : { //Freezer name given by the NAME_PROPERTY
+ "ROW_NUM" : 9, //Number of rows
+ "COLUMN_NUM" : 9, //Number of columns
+ "BOX_NUM" : 3 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
+ },
+ "BENCH" : { //Freezer name given by the NAME_PROPERTY
+ "ROW_NUM" : 1, //Number of rows
+ "COLUMN_NUM" : 1, //Number of columns
+ "BOX_NUM" : 99999 //Boxes on each rack, used for validation, to avoid validation increase the number to 9999 for example
+ }
+ }
+ };
+
+ /* New Sample definition tests*/
+ this.sampleTypeDefinitionsExtension = {
+ "MEDIA" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Media",
+ "TYPE": "MEDIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "SOLUTION_BUFFER" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Media",
+ "TYPE": "MEDIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "GENERAL_PROTOCOL" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Media",
+ "TYPE": "MEDIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Enzyme",
+ "TYPE": "ENZYME",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "General protocol",
+ "TYPE": "GENERAL_PROTOCOL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "PCR_PROTOCOL" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Enzyme",
+ "TYPE": "ENZYME",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ ],
+ },
+
+ "WESTERN_BLOTTING_PROTOCOL" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Antibody",
+ "TYPE": "ANTIBODY",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ ],
+ },
+
+ "PLASMID" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "BACTERIA" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Bacteria parents",
+ "TYPE": "BACTERIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "YEAST" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Yeast parents",
+ "TYPE": "YEAST",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "CELL_LINE" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Parental cell line",
+ "TYPE": "CELL_LINE",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Parental fly",
+ "TYPE": "FLY",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "FLY" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Fly parents",
+ "TYPE": "FLY",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "PLASMID_RELATIONSHIP", "MANDATORY" : false },{"TYPE" : "PLASMID_ANNOTATION", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ },
+
+ "EXPERIMENTAL_STEP" : {
+ "SAMPLE_PARENTS_HINT" : [
+ {
+ "LABEL" : "Antibody",
+ "TYPE": "ANTIBODY",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false }, {"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Bacteria",
+ "TYPE": "BACTERIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Cell line",
+ "TYPE": "CELL_LINE",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Chemical",
+ "TYPE": "CHEMICAL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Enzyme",
+ "TYPE": "ENZYME",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Fly",
+ "TYPE": "FLY",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Media",
+ "TYPE": "MEDIA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Oligo",
+ "TYPE": "OLIGO",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Plasmid",
+ "TYPE": "PLASMID",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "RNA",
+ "TYPE": "RNA",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Solution/Buffer",
+ "TYPE": "SOLUTION_BUFFER",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "QUANTITY", "MANDATORY" : false },{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Yeast",
+ "TYPE": "YEAST",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "General protocol",
+ "TYPE": "GENERAL_PROTOCOL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "PCR protocol",
+ "TYPE": "PCR_PROTOCOL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ },
+ {
+ "LABEL" : "Western blotting protocol",
+ "TYPE": "WESTERN_BLOTTING_PROTOCOL",
+ "MIN_COUNT" : 0,
+ "ANNOTATION_PROPERTIES" : [{"TYPE" : "COMMENTS", "MANDATORY" : false }]
+ }
+ ],
+ }
+
+ }
+
+
+ //The properties you want to appear on the tables, if you don«t specify the list, all of them will appear by default.
+ this.typePropertiesForTable = {};
+
+ //The colors for the notes, if you don«t specify the color, light yellow will be used by default.
+ this.colorForInspectors = {};
+
+
+ this.sampleFormContentExtra = function(sampleTypeCode, sample, containerId) {
+ if(sampleTypeCode === "EXPERIMENTAL_STEP") {
+ var isEnabled = mainController.currentView._sampleFormModel.mode !== FormMode.VIEW;
+ var freeFormTableController = new FreeFormTableController(sample, isEnabled);
+ freeFormTableController.init($("#" + containerId));
+ }
+
+ }
+}
+});
\ No newline at end of file
--
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