Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
O
openbis
Manage
Activity
Members
Labels
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Model registry
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
sispub
openbis
Commits
72f37b46
Commit
72f37b46
authored
15 years ago
by
felmer
Browse files
Options
Downloads
Patches
Plain Diff
SE-170 fix tests
SVN: 13738
parent
e97078b5
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
+18
-2
18 additions, 2 deletions
...nbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
with
18 additions
and
2 deletions
rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
+
18
−
2
View file @
72f37b46
...
@@ -596,14 +596,16 @@ public class ResultDataSetUploaderTest extends AssertJUnit
...
@@ -596,14 +596,16 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return
info
;
return
info
;
}
}
private
ProteinSummary
createProteinSummary
(
ProteinSummaryDataFilter
...
dataFilters
)
private
ProteinSummary
createProteinSummary
()
{
{
ProteinSummary
proteinSummary
=
new
ProteinSummary
();
ProteinSummary
proteinSummary
=
new
ProteinSummary
();
ProteinSummaryHeader
proteinSummaryHeader
=
new
ProteinSummaryHeader
();
ProteinSummaryHeader
proteinSummaryHeader
=
new
ProteinSummaryHeader
();
proteinSummaryHeader
.
setReferenceDatabase
(
REFERENCE_DATABASE
);
proteinSummaryHeader
.
setReferenceDatabase
(
REFERENCE_DATABASE
);
ProgramDetails
programDetails
=
new
ProgramDetails
();
ProgramDetails
programDetails
=
new
ProgramDetails
();
ProteinProphetDetails
proteinProphetDetails
=
new
ProteinProphetDetails
();
ProteinProphetDetails
proteinProphetDetails
=
new
ProteinProphetDetails
();
proteinProphetDetails
.
setDataFilters
(
Arrays
.
asList
(
dataFilters
));
ProteinSummaryDataFilter
m1
=
createFilter
(
0.5
,
0.125
);
ProteinSummaryDataFilter
m2
=
createFilter
(
1.0
,
0.0
);
proteinProphetDetails
.
setDataFilters
(
Arrays
.
asList
(
m1
,
m2
));
programDetails
.
setSummary
(
new
Object
[]
programDetails
.
setSummary
(
new
Object
[]
{
proteinProphetDetails
});
{
proteinProphetDetails
});
proteinSummaryHeader
.
setProgramDetails
(
programDetails
);
proteinSummaryHeader
.
setProgramDetails
(
programDetails
);
...
@@ -612,4 +614,18 @@ public class ResultDataSetUploaderTest extends AssertJUnit
...
@@ -612,4 +614,18 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return
proteinSummary
;
return
proteinSummary
;
}
}
private
ProteinSummaryDataFilter
createFilter
(
final
double
probability
,
final
double
fdr
)
{
context
.
checking
(
new
Expectations
()
{
{
one
(
dao
).
createProbabilityToFDRMapping
(
DATA_SET_ID
,
probability
,
fdr
);
}
});
ProteinSummaryDataFilter
mapping
=
new
ProteinSummaryDataFilter
();
mapping
.
setMinProbability
(
probability
);
mapping
.
setFalsePositiveErrorRate
(
fdr
);
return
mapping
;
}
}
}
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment