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Commit 72f37b46 authored by felmer's avatar felmer
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SE-170 fix tests

SVN: 13738
parent e97078b5
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...@@ -596,14 +596,16 @@ public class ResultDataSetUploaderTest extends AssertJUnit ...@@ -596,14 +596,16 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return info; return info;
} }
private ProteinSummary createProteinSummary(ProteinSummaryDataFilter... dataFilters) private ProteinSummary createProteinSummary()
{ {
ProteinSummary proteinSummary = new ProteinSummary(); ProteinSummary proteinSummary = new ProteinSummary();
ProteinSummaryHeader proteinSummaryHeader = new ProteinSummaryHeader(); ProteinSummaryHeader proteinSummaryHeader = new ProteinSummaryHeader();
proteinSummaryHeader.setReferenceDatabase(REFERENCE_DATABASE); proteinSummaryHeader.setReferenceDatabase(REFERENCE_DATABASE);
ProgramDetails programDetails = new ProgramDetails(); ProgramDetails programDetails = new ProgramDetails();
ProteinProphetDetails proteinProphetDetails = new ProteinProphetDetails(); ProteinProphetDetails proteinProphetDetails = new ProteinProphetDetails();
proteinProphetDetails.setDataFilters(Arrays.asList(dataFilters)); ProteinSummaryDataFilter m1 = createFilter(0.5, 0.125);
ProteinSummaryDataFilter m2 = createFilter(1.0, 0.0);
proteinProphetDetails.setDataFilters(Arrays.asList(m1, m2));
programDetails.setSummary(new Object[] programDetails.setSummary(new Object[]
{ proteinProphetDetails }); { proteinProphetDetails });
proteinSummaryHeader.setProgramDetails(programDetails); proteinSummaryHeader.setProgramDetails(programDetails);
...@@ -612,4 +614,18 @@ public class ResultDataSetUploaderTest extends AssertJUnit ...@@ -612,4 +614,18 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return proteinSummary; return proteinSummary;
} }
private ProteinSummaryDataFilter createFilter(final double probability, final double fdr)
{
context.checking(new Expectations()
{
{
one(dao).createProbabilityToFDRMapping(DATA_SET_ID, probability, fdr);
}
});
ProteinSummaryDataFilter mapping = new ProteinSummaryDataFilter();
mapping.setMinProbability(probability);
mapping.setFalsePositiveErrorRate(fdr);
return mapping;
}
} }
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