From 72f37b46a4cfcb9ee9be0828acea5a1138c7c45c Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Tue, 8 Dec 2009 13:02:29 +0000
Subject: [PATCH] SE-170 fix tests
SVN: 13738
---
.../ResultDataSetUploaderTest.java | 20 +++++++++++++++++--
1 file changed, 18 insertions(+), 2 deletions(-)
diff --git a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
index 827d7e95028..fc7e437142b 100644
--- a/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
+++ b/rtd_phosphonetx/sourceTest/java/ch/systemsx/cisd/openbis/etlserver/phosphonetx/ResultDataSetUploaderTest.java
@@ -596,14 +596,16 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return info;
}
- private ProteinSummary createProteinSummary(ProteinSummaryDataFilter... dataFilters)
+ private ProteinSummary createProteinSummary()
{
ProteinSummary proteinSummary = new ProteinSummary();
ProteinSummaryHeader proteinSummaryHeader = new ProteinSummaryHeader();
proteinSummaryHeader.setReferenceDatabase(REFERENCE_DATABASE);
ProgramDetails programDetails = new ProgramDetails();
ProteinProphetDetails proteinProphetDetails = new ProteinProphetDetails();
- proteinProphetDetails.setDataFilters(Arrays.asList(dataFilters));
+ ProteinSummaryDataFilter m1 = createFilter(0.5, 0.125);
+ ProteinSummaryDataFilter m2 = createFilter(1.0, 0.0);
+ proteinProphetDetails.setDataFilters(Arrays.asList(m1, m2));
programDetails.setSummary(new Object[]
{ proteinProphetDetails });
proteinSummaryHeader.setProgramDetails(programDetails);
@@ -612,4 +614,18 @@ public class ResultDataSetUploaderTest extends AssertJUnit
return proteinSummary;
}
+ private ProteinSummaryDataFilter createFilter(final double probability, final double fdr)
+ {
+ context.checking(new Expectations()
+ {
+ {
+ one(dao).createProbabilityToFDRMapping(DATA_SET_ID, probability, fdr);
+ }
+ });
+ ProteinSummaryDataFilter mapping = new ProteinSummaryDataFilter();
+ mapping.setMinProbability(probability);
+ mapping.setFalsePositiveErrorRate(fdr);
+ return mapping;
+ }
+
}
--
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