minor: sanofi - synchronize Matt's changes

SVN: 22680

sanofi/dist/etc/sanofi-dropbox/dropbox-segmentation-images.py

-"""
-This is the segmentation images dropbox which accepts directories containing images.
-Each directory will be registered as one dataset. 
-The naming convention of the directory is the following:
-    <raw-image-dataset-code>_<analysis-procedure>_<any-text>
-e.g.
-    20110809142909177-826_AnalysisProcXYZ_myOverlays
-The dataset with the code specified in the directory name will become a parent of the new dataset.
-The new dataset is supposed to contain segmentation results (as images) of the parent dataset. 
-"""
-import utils
-import notifications 
-import registration
-
-from ch.systemsx.cisd.openbis.generic.shared.basic.dto.api import ValidationException
-
-reload(utils)
-# Can be switched on manually only after the module's code has been changed on the fly:
-#reload(notifications)
-#reload(registration)
-
-def createEmailUtils():
-    global experiment
-    global plateCode
-
-    return notifications.EmailUtils(state, incoming, experiment, plateCode)
-
-def commit_transaction(service, transaction):
-    createEmailUtils().sendSuccessConfirmation()
-
-def rollback_service(service, ex):
-    createEmailUtils().sendRollbackError(ex)
-    
-# ---------------------
-
-global experiment
-global plateCode 
-
-if incoming.isDirectory():
-    experiment = None
-    plateCode = None
-    
-    transaction = service.transaction(incoming, factory)
-    
-    tokens = utils.extractFileBasename(incoming.getName()).split('_')
-    if (len(tokens) < 2):
-        raise ValidationException("Incoming directory name "+incoming.getName()+" does not adhere to the naming convention <raw-image-dataset-code>_<analysis-procedure>_<any-text>")
-    parentDatasetCode = tokens[0]
-    analysisProcedureCode = tokens[1]
-    (plate, experiment) = registration.findConnectedPlate(transaction, parentDatasetCode)
-    plateCode = plate.getCode()
-    
-    registration.registerSegmentationImages(incoming, plate, parentDatasetCode, analysisProcedureCode, transaction, factory)
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