From 4c512ad27282e45bd49d21f142863236411f23de Mon Sep 17 00:00:00 2001
From: tpylak <tpylak>
Date: Mon, 29 Aug 2011 13:07:39 +0000
Subject: [PATCH] minor: sanofi - synchronize Matt's changes
SVN: 22680
---
.../dropbox-segmentation-images.py | 53 -------------------
1 file changed, 53 deletions(-)
delete mode 100755 sanofi/dist/etc/sanofi-dropbox/dropbox-segmentation-images.py
diff --git a/sanofi/dist/etc/sanofi-dropbox/dropbox-segmentation-images.py b/sanofi/dist/etc/sanofi-dropbox/dropbox-segmentation-images.py
deleted file mode 100755
index 56c85ab1cec..00000000000
--- a/sanofi/dist/etc/sanofi-dropbox/dropbox-segmentation-images.py
+++ /dev/null
@@ -1,53 +0,0 @@
-"""
-This is the segmentation images dropbox which accepts directories containing images.
-Each directory will be registered as one dataset.
-The naming convention of the directory is the following:
- <raw-image-dataset-code>_<analysis-procedure>_<any-text>
-e.g.
- 20110809142909177-826_AnalysisProcXYZ_myOverlays
-The dataset with the code specified in the directory name will become a parent of the new dataset.
-The new dataset is supposed to contain segmentation results (as images) of the parent dataset.
-"""
-import utils
-import notifications
-import registration
-
-from ch.systemsx.cisd.openbis.generic.shared.basic.dto.api import ValidationException
-
-reload(utils)
-# Can be switched on manually only after the module's code has been changed on the fly:
-#reload(notifications)
-#reload(registration)
-
-def createEmailUtils():
- global experiment
- global plateCode
-
- return notifications.EmailUtils(state, incoming, experiment, plateCode)
-
-def commit_transaction(service, transaction):
- createEmailUtils().sendSuccessConfirmation()
-
-def rollback_service(service, ex):
- createEmailUtils().sendRollbackError(ex)
-
-# ---------------------
-
-global experiment
-global plateCode
-
-if incoming.isDirectory():
- experiment = None
- plateCode = None
-
- transaction = service.transaction(incoming, factory)
-
- tokens = utils.extractFileBasename(incoming.getName()).split('_')
- if (len(tokens) < 2):
- raise ValidationException("Incoming directory name "+incoming.getName()+" does not adhere to the naming convention <raw-image-dataset-code>_<analysis-procedure>_<any-text>")
- parentDatasetCode = tokens[0]
- analysisProcedureCode = tokens[1]
- (plate, experiment) = registration.findConnectedPlate(transaction, parentDatasetCode)
- plateCode = plate.getCode()
-
- registration.registerSegmentationImages(incoming, plate, parentDatasetCode, analysisProcedureCode, transaction, factory)
\ No newline at end of file
--
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