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Commit 476acf14 authored by tpylak's avatar tpylak
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SE-145 set reprocess-faulty-datasets in yeastx integration tests

SVN: 12960
parent c018565e
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...@@ -59,12 +59,6 @@ mail.smtp.host = file://${root} ...@@ -59,12 +59,6 @@ mail.smtp.host = file://${root}
# Valid only when auto-detection method is used to determine if an incoming data are ready to be processed. # Valid only when auto-detection method is used to determine if an incoming data are ready to be processed.
quiet-period = 3 quiet-period = 3
# Specifies what should happen if an error occurs during dataset processing.
# By default this flag is set to false and user has to modify the 'faulty paths file'
# each time the faulty dataset should be processed again.
# Set this flag to true if the processing should be repeated after some time without any manual intervention.
reprocess-faulty-datasets = true
# ------------------------ # ------------------------
inputs=main-thread, eicml-uploader, fiaml-uploader, quantml-uploader inputs=main-thread, eicml-uploader, fiaml-uploader, quantml-uploader
...@@ -86,6 +80,7 @@ main-thread.incoming-dir = ${root}/incoming ...@@ -86,6 +80,7 @@ main-thread.incoming-dir = ${root}/incoming
# The default value is 'marker-file'. # The default value is 'marker-file'.
main-thread.incoming-data-completeness-condition = auto-detection main-thread.incoming-data-completeness-condition = auto-detection
main-thread.incoming-dir.format = main-thread.incoming-dir.format =
main-thread.reprocess-faulty-datasets = true
sample-name-property-code = samplename sample-name-property-code = samplename
experiment-name-property-code = name experiment-name-property-code = name
...@@ -142,7 +137,7 @@ main-thread.storage-processor.processor.processor = ch.systemsx.cisd.etlserver.D ...@@ -142,7 +137,7 @@ main-thread.storage-processor.processor.processor = ch.systemsx.cisd.etlserver.D
eicml-uploader.incoming-dir = ${root}/incoming-eicml eicml-uploader.incoming-dir = ${root}/incoming-eicml
eicml-uploader.incoming-data-completeness-condition = auto-detection eicml-uploader.incoming-data-completeness-condition = auto-detection
eicml-uploader.incoming-dir.format = eicml-uploader.incoming-dir.format =
eicml-uploader.reprocess-faulty-datasets = false
# The extractor class to use for code extraction # The extractor class to use for code extraction
eicml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.etl.DataSetInfoExtractorYeastX eicml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.etl.DataSetInfoExtractorYeastX
...@@ -173,7 +168,7 @@ eicml-uploader.storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultS ...@@ -173,7 +168,7 @@ eicml-uploader.storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultS
fiaml-uploader.incoming-dir = ${root}/incoming-fiaml fiaml-uploader.incoming-dir = ${root}/incoming-fiaml
fiaml-uploader.incoming-data-completeness-condition = auto-detection fiaml-uploader.incoming-data-completeness-condition = auto-detection
fiaml-uploader.incoming-dir.format = fiaml-uploader.incoming-dir.format =
fiaml-uploader.reprocess-faulty-datasets = false
# The extractor class to use for code extraction # The extractor class to use for code extraction
fiaml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.etl.DataSetInfoExtractorYeastX fiaml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.etl.DataSetInfoExtractorYeastX
...@@ -204,6 +199,7 @@ fiaml-uploader.storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultS ...@@ -204,6 +199,7 @@ fiaml-uploader.storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultS
quantml-uploader.incoming-dir = ${root}/incoming-quantml quantml-uploader.incoming-dir = ${root}/incoming-quantml
quantml-uploader.incoming-data-completeness-condition = auto-detection quantml-uploader.incoming-data-completeness-condition = auto-detection
quantml-uploader.incoming-dir.format = quantml-uploader.incoming-dir.format =
quantml-uploader.reprocess-faulty-datasets = false
# The extractor class to use for code extraction # The extractor class to use for code extraction
quantml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.quant.QuantMLDataSetInfoExtractor quantml-uploader.data-set-info-extractor = ch.systemsx.cisd.yeastx.quant.QuantMLDataSetInfoExtractor
......
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