pybis playground localhost.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Using pybis"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Log into openBIS"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "········\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "'vermeul-160721001911317xA9E71D59EE92752CE9F9992FB3760264'"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "from pybis import Openbis\n",
    "import getpass\n",
    "o = Openbis('https://localhost:8443', verify_certificates=False)\n",
    "\n",
    "password = getpass.getpass()\n",
    "o.login('vermeul',password)\n",
    "o.token"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "True"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "o.is_token_valid()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "o.logout()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "False"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "o.is_token_valid()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## get general information about openBIS"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>code</th>\n",
       "      <th>description</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>ANOTHER_SPACE_NAME</td>\n",
       "      <td>another space description</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>MATERIALS</td>\n",
       "      <td>None</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>METHODS</td>\n",
       "      <td>None</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>MY_NEW_SPACE</td>\n",
       "      <td>this is yet another space</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>VERMEUL</td>\n",
       "      <td>Space for user vermeul</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                 code                description\n",
       "0  ANOTHER_SPACE_NAME  another space description\n",
       "1           MATERIALS                       None\n",
       "2             METHODS                       None\n",
       "3        MY_NEW_SPACE  this is yet another space\n",
       "4             VERMEUL     Space for user vermeul"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "o.get_spaces()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>code</th>\n",
       "      <th>description</th>\n",
       "      <th>kind</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>ELN_PREVIEW</td>\n",
       "      <td>ELN Preview image</td>\n",
       "      <td>PHYSICAL</td>\n",
       "    </tr>\n",
       "    <tr>\n",