Welcome to pyBIS!

pyBIS is a Python module for interacting with openBIS, designed to be used in Jupyter. It offers a sort of IDE for openBIS, supporting TAB completition and input checks, making the life of a researcher hopefully easier.

PyBIS Documentation

Requirements and organization

Dependencies and Requirements

• pyBIS relies the openBIS API v3; openBIS version 16.05.2 or newer
• pyBIS uses Python 3.3 and pandas

Installation

• locate the jupyter-api folder found in pybis/src/coreplugins
• copy this folder to openbis/servers/core-plugins in your openBIS installation
• register the plugin by editing openbis/servers/core-plugins/core-plugins.properties :
• enabled-modules = jupyter-api (separate multiple plugins with comma)
• restart your DSS to activate the plugin