SSDM-6019 : Project Authorization - modify @RolesAllowed annotations at non-entity related methods - fix after failing tests

SVN: 39077

SVN: 39076

SSDM-6019 : Project Authorization - modify @RolesAllowed annotations at non-entity related methods - fix rtd_phosphonetx tests

SVN: 39046

SVN: 38821

SVN: 38762

SSDM-5529 : Project Authorization - data set predicates and validators - refactored all predicate and validator tests to work similar to (i.e. use ProjectAuthorizationUser) the tests that verify service methods

SVN: 38670

SVN: 38633

SVN: 38603

SVN: 38567

SVN: 38444

SVN: 38279

SVN: 38274

SSDM-2733: Bug fixed by introducing a cache for MaterialType objects because the bug shows when a material type has a property of type material of the same type.

SVN: 38156

SVN: 37893

SVN: 37892

SVN: 37509

SSDM-4379: fixing classpath of compileGWTToTemp task for openbis, rtd_phosphonetx and screening project.

SVN: 37486

SVN: 37390

SVN: 37368

SSDM-3998: Remove hard coded 'Sample' and 'Experiment' references. web-client.properties define the texts by 'sample-text' (default: Sample) and 'experiment-text' (default: Experiment).

SVN: 36963

SSDM-3895: Explicitely specify by a property whether proteomics/screening application contexts are needed.

SVN: 36912

SVN: 36335

SVN: 36217

SSDM-3202: extending IProteomicsDataApiFacade, IProteomicsDataService and IProteomicsDataServiceInternal with method listAllRawDataSamples(). Introducing system tests ProteomicsDataServiceTest which tests listRawDataSamples(), listAllRawDataSamples() and processingRawData() for an admin user and a space user.

SVN: 36107

SVN: 36106

SVN: 36104

SVN: 35828

SVN: 35758

SVN: 34638

SVN: 34631

SSDM-1768 ProcessExecutor, IPathCopier and RsyncCopier extended to allow to monitor stdout and stderr during processing.

SVN: 33969

SSDM-1768 ProcessExecutor, IPathCopier and RsyncCopier extended to allow to monitor stdout and stderr during processing.

SVN: 33962

SVN: 33824

SSDM-1532: Configurable session time out in case of no-login. No login text appears also in GWT client.

SVN: 33470

SVN: 33457

SVN: 33302

SVN: 33253

SSDM-1277 move IProcessingPluginTask from generic.server.plugins.task to generic.shared to fix dependency violation

SVN: 33047

SVN: 32811

- modify wstx-asl jar not to be found by SAXParserFactory.newInstance() method call (see http://docs.oracle.com/javase/7/docs/api/javax/xml/parsers/SAXParserFactory.html#newInstance())
- generate missing sha1 checksums for the new jars
- remove javax.xml.parsers.SAXParserFactory property from launch configs - it is no longer needed when wstx-asl is not found

SVN: 32299