Commits · c81d7ba5e02454f47b8c45ac6a636b14571c9e2f · sispub / openbis

Feb 02, 2018
- created folder for test database - was removed in git when the files within were removed · 77793d43
  yvesn authored 7 years ago
  
  77793d43
Dec 04, 2017
- write a marker file when it is a 10x run · f22ce1b4
  kohleman authored 7 years ago
  
  SVN: 39004
  f22ce1b4
Nov 24, 2017
- Minor, config adaption: added data set based destination folders · d3a97ad6
  kohleman authored 7 years ago
  
  SVN: 38949
  d3a97ad6
- added data set based destination folders · 3b617d29
  kohleman authored 7 years ago
  
  SVN: 38948
  3b617d29
Nov 09, 2017
- Added: depending on the data set type the extra copy is with higher priority · a1511c57
  kohleman authored 7 years ago
  
  SVN: 38883
  a1511c57
Oct 16, 2017
- small extension for 10x samples · 1e09f9e9
  kohleman authored 7 years ago
  
  SVN: 38822
  1e09f9e9
Sep 25, 2017
- SSDM-5463: moving the data set kind from the data set type to the data set in all of openBIS · 57792209
  yvesn authored 7 years ago
  
  SVN: 38762
  57792209
Jul 24, 2017
- bugfix: Invoice sent field is read out always · b3b618ae
  kohleman authored 7 years ago
  
  SVN: 38573
  b3b618ae
Jul 13, 2017
- SSDM-5321 : Updating all openBIS key stores to latest version that accepts... · cdf2de13
  juanf authored 7 years ago
  
  SSDM-5321 : Updating all openBIS key stores to latest version that accepts Let's encrypt certificates. SVN: 38526
  cdf2de13
Jun 21, 2017
- SSDM-4575 : Upgrade to Gradle 3.x - updated gradlew to 3.5 · 467dbc81
  yvesn authored 7 years ago
  
  SVN: 38433
  467dbc81
May 19, 2017
- bug fix for 10x index set handling · 2b82f0bb
  kohleman authored 7 years ago
  
  SVN: 38199
  2b82f0bb
Apr 20, 2017
- added commonbase to the zipTree · b555599f
  kohleman authored 7 years ago
  
  SVN: 38071
  b555599f
Apr 19, 2017
- - removed Java8 references · 7cd3010e
  kohleman authored 7 years ago
  
  SVN: 38070
  7cd3010e
- - fixed bug, which ignored more than one lane as a parameter (command line parsing was wrong) · e5420b59
  kohleman authored 7 years ago
  
  SVN: 38069
  e5420b59
- - using v3 for new features · 21e8cb05
  kohleman authored 7 years ago
  
  - add "data transferred" timestamp to lane - If rsync fails (data copy), then send a mail to the admin SVN: 38068
  21e8cb05
Apr 03, 2017
- -added support for 10x samples · 67a4cf34
  kohleman authored 7 years ago
  
  SVN: 38008
  67a4cf34
Mar 22, 2017
- SSDM-4843: TrackingBO back to previous. · 214bdfed
  felmer authored 8 years ago
  
  SVN: 37930
  214bdfed
Mar 21, 2017
- SSDM-4843 : Extra Rsync arguments on FastRecursiveHardLinkMaker · fdb9f24c
  juanf authored 8 years ago
  
  SVN: 37928
  fdb9f24c
- SSDM-4843 : Extra Rsync arguments on FastRecursiveHardLinkMaker · 5c1fdf8a
  juanf authored 8 years ago
  
  SVN: 37927
  5c1fdf8a
Dec 15, 2016
- handle the case of re-registering a single lane · b3128fbb
  kohleman authored 8 years ago
  
  SVN: 37511
  b3128fbb
- SSDM-4187: ProjectIdentifier added to SampleUpdates and SampleUpdatesDTO · cd77a6e8
  felmer authored 8 years ago
  
  SVN: 37509
  cd77a6e8
- minor: small code cleanups · 47f39034
  kohleman authored 8 years ago
  
  SVN: 37508
  47f39034
- adapting description to changed folder structure on jenkins · c9d8aec1
  felmer authored 8 years ago
  
  SVN: 37501
  c9d8aec1
Dec 14, 2016
- added integration for aggregated FASTQC plots · 2e0292cc
  kohleman authored 8 years ago
  
  SVN: 37496
  2e0292cc
Dec 13, 2016
- bugfix: NextSeq String in invoice was never written · c4b26b74
  kohleman authored 8 years ago
  
  SVN: 37485
  c4b26b74
Dec 09, 2016

bug fix to handle not specified boolean values in the sample properties... · 49565430

kohleman authored 8 years ago

bug fix to handle not specified boolean values in the sample properties (happens when registering samples via Excel)

SVN: 37461

49565430

Dec 01, 2016

- regular samples need to be unique · 80b6654d

kohleman authored 8 years ago

- Pools not as these should have the lane information (same pool on different lanes)

SVN: 37423

80b6654d

Nov 30, 2016
- -added unified camel case naming for pi names · b5c42036
  kohleman authored 8 years ago
  
  -added lane info to the pools SVN: 37418
  b5c42036
Nov 29, 2016
- SSDM-4379: add 'evaluationDependsOn(':commonbase')' to all build.gradle · 3a632a2d
  felmer authored 8 years ago
  
  SVN: 37390
  3a632a2d
Nov 28, 2016
- - [x] if Notes, Received, Index2 empty, then do not show them · e43f7013
  kohleman authored 8 years ago
  
  - [x] Lower case for Pi Names - put more code into functions to make it more modular SVN: 37385
  e43f7013
- SSDM-4379: add 'commonbase' to all settings.gradle files · dd220f7d
  felmer authored 8 years ago
  
  SVN: 37368
  dd220f7d
Nov 25, 2016

- [x] PI, data space shift one column to the right · ae3b4b28

kohleman authored 8 years ago

- [x] Flow cell details shift one column to the right
- [x] Trimming of PI name
- [x] Above Run folder Name: "<Sequencer (HiSeq, MiSeq, NextSeq)> sequencing", bold, underlined
- [x] Samples head row two rows below Runfolder_name
- [x] changed zoom level to 133%
- [x] Remove column Flowcell:Lane
- [x] make Sample unique in the list
- [x] if Pool exits, list it below Runfolder_name

SVN: 37358

ae3b4b28

Nov 16, 2016
- Trigger for automatic access to the DBM bioinformaticians if a new DBM space is created · 2133c186
  kohleman authored 8 years ago
  
  SVN: 37323
  2133c186
Oct 12, 2016
- forgot to remove import · 3a189133
  kohleman authored 8 years ago
  
  SVN: 37157
  3a189133
- cannot use Java8 features... · ed64dc22
  kohleman authored 8 years ago
  
  SVN: 37156
  ed64dc22
- added a flag for listing the space white list · 24c59680
  kohleman authored 8 years ago
  
  SVN: 37155
  24c59680
Sep 20, 2016

- split rsync flags by default · c99e240d

kohleman authored 8 years ago

- use a different RsyncCopier to have full control over the flags
- added some time logging about the consumed time

SVN: 37089

c99e240d

Sep 16, 2016
- Fix null pointer exception · 788d6c01
  kohleman authored 8 years ago
  
  SVN: 37085
  788d6c01
- added better logging · dd639c0e
  kohleman authored 8 years ago
  
  SVN: 37083
  dd639c0e
Sep 14, 2016
- added an ugly hack, but this is the quickest fix for now.. · 05f76797
  kohleman authored 8 years ago
  
  SVN: 37080
  05f76797