- modify wstx-asl jar not to be found by SAXParserFactory.newInstance() method call (see http://docs.oracle.com/javase/7/docs/api/javax/xml/parsers/SAXParserFactory.html#newInstance())
- generate missing sha1 checksums for the new jars
- remove javax.xml.parsers.SAXParserFactory property from launch configs - it is no longer needed when wstx-asl is not found

SVN: 32299

SVN: 32261

SVN: 32243

SVN: 32129

SVN: 32088

SVN: 32086

SVN: 32031

SVN: 32025

SVN: 31921

SSDM-561: 'apply from' remote (http://svncisd.ethz.ch/repos/cisd/gradle/trunk/javaproject.gradle) replaced by local (../gradle/javaproject.gradle)

SVN: 31893

SSDM-515: Change eclipse default output dir to 'targets/www/WEB-INF/classes' for cifex, openbis, rtd_phosphonetx, and screening.

SVN: 31827

SVN: 31793

SVN: 31784

SVN: 31757

SSDM-427: dbin_id removed from tables role_assignments, material_types, experiment_types, sample_types, dataset_types, spaces

SVN: 31714

SSDM-360: Adding to core plugins of type data sources for technologies screening and proteomics properties for owner and password as variables to be defined in DSS and AS service.properties.

SVN: 31639

SVN: 31509

SVN: 31504

SVN: 31276

SWE-22 / SSDM-16: Launch configurations for generic/screening/proteomics openBIS prepared/compiled with gradle

SVN: 31269

SWE-22 / SSDM-16: Gradle based GWT prepare & GWT compile for generic, screening and proteomics openBIS

SVN: 31245

SVN: 30812

- fix dependencies (move EODSQL mappers to common project)
- add unit test for the maintenance task

SVN: 30807

SP-1090, SWE-22: GWT prepare/compile: remove cifex.jar from 'prepareGWT', add gwt-image-loader to compile dependencies of openbis, add prepare/compileGWT to rtd_phosphonetx, add gradle launch configs

SVN: 30317

SVN: 30228

SVN: 30132

SVN: 30130

SVN: 30117

SVN: 30107

SP-970, SWE-22: unify gradle-wrapper.properties in all projects. That is, use Gradle 1.8 in all projects.

SVN: 30106

SWE-22 / SP-970: Create openBIS-proteomics-API.zip in openbis_standard_technologies instead of datastore_server

SVN: 30061

SP-970, SWE-22: added missing JAR files to DSS distribution, removing not needed JAR filesfrom DSS distribution, add the service.properties and web-client.properties of AS from project openbis_standard_technologies, adding missing classes to openbis.jar for Web Start clients, create proteomics and screening JARs with AS and DSS classes/resources.

SVN: 30056

SVN: 30033

SVN: 30032

SP-982, CCS-62: Threshold introduce to prevent feeding protein database for prot.xml files which are too large. In this case search experiment property NOT_PROCESSED is set to give a reason visible for the user on the experiment details view.

SVN: 30031

SVN: 29989

SVN: 29951

SVN: 29923

SVN: 29907

SP-612, SWE-22: remove settings.gradle from all projects except gradle. Add deep_sequencing_unit to gradle/settings.gradle.

SVN: 29905