SVN: 34528

SVN: 34527

SVN: 34526

SVN: 34519

SSDM-2294 : V3 AS API - paging and sorting of search results - reduce the default cache size to 256m as openBIS is given 2g by default

SVN: 34518

SSDM-2294 : V3 AS API - paging and sorting of search results - make EHCache check memory consumption + extract cache key and entry to separate classes to make sure it does not follow inner class "outer this" reference during the calculation

SVN: 34517

SVN: 34516

SSDM-2328: The two problems described in the comment of the issue are solved. Many reference images of the system tests had to be changed. Most image changes are to small to be visible except merged images in MicroscopyImageDropboxTest.
IntensityRescaling.rescaleIntensityLevelTo8Bits: Improved algorithm which preserves color hue and satuarion.
ImageUtil: Version of rescale() with a representative color channel.
Hdf5ThumbnailGenerator.generateThumbnailInternally(): Using new ImageUtil.rescale function providing representative channel obtained from already available meta-data.
ImageChannelsUtils.rescaleIfNot8Bit: Parameter channelColorOrNull added. This is used to calculated correct levels (based on a threshold) and to re-scale intensities correctly.

SVN: 34515

SVN: 34514

SSDM-2294 : V3 AS API - paging and sorting of search results - fix a bug in paging when it invoked for a Collection that wasn't a List or Set

SVN: 34513

SSDM-2294 : V3 AS API - paging and sorting of search results - more tests and bugfix in SamplePE equals

SVN: 34512

SVN: 34511

SSDM-2294 : V3 AS API - paging and sorting of search results - sort options for the main entity kinds

SVN: 34510

- remove cached search results on logout
- make cache thread safe
- log cache operations

SVN: 34509

- remove cached search results on logout
- make cache thread safe
- log cache operations

SVN: 34508

SVN: 34507

SSDM-2293 : Polishing, labels don't appear for the positions where the current sample is, the rack is highlighted instead.

SVN: 34506

SVN: 34505

SVN: 34504

SVN: 34503

- include criteria in the cache key
- implement equals for criteria
- add basic automated tests

SVN: 34502

SVN: 34501

SSDM-2294 : V3 AS API - paging and sorting of search results - make it possible to sort/page/cache in all V3 searches and return SearchResult instead of a List

SVN: 34500

SVN: 34499

- cache with ehcache
- keep original collections in views
- toString methods for all V3 DTOs

SVN: 34498

SVN: 34497

SVN: 34496

SVN: 34495

generic flowcell creation for all type of Sequencers (ALL Hiseq 2000+, NextSeq, MiSeq) using the Flowcell Id as code

SVN: 34494

SSDM-2293 : Storage manager that allows to add/delete different positions for a single sample on the same box.

SVN: 34493

SVN: 34492

SVN: 34491

SVN: 34490

SVN: 34488

MLArchiverTask: Remove data source check in constructor. Reason: Recently the archiver is already initialized when the web of spring beans is created in order to test configuration errors (important for multi data set archiving).

SVN: 34486

SVN: 34485

SVN: 34484

SVN: 34482

SVN: 34481

SVN: 34479