SSDM-3202: extending IProteomicsDataApiFacade, IProteomicsDataService and IProteomicsDataServiceInternal with method listAllRawDataSamples(). Introducing system tests ProteomicsDataServiceTest which tests listRawDataSamples(), listAllRawDataSamples() and processingRawData() for an admin user and a space user.

SVN: 36107

SVN: 36106

SVN: 36104

SVN: 35828

SVN: 35758

SVN: 34638

SVN: 34631

SSDM-1768 ProcessExecutor, IPathCopier and RsyncCopier extended to allow to monitor stdout and stderr during processing.

SVN: 33969

SSDM-1768 ProcessExecutor, IPathCopier and RsyncCopier extended to allow to monitor stdout and stderr during processing.

SVN: 33962

SVN: 33824

SSDM-1532: Configurable session time out in case of no-login. No login text appears also in GWT client.

SVN: 33470

SVN: 33457

SVN: 33302

SVN: 33253

SSDM-1277 move IProcessingPluginTask from generic.server.plugins.task to generic.shared to fix dependency violation

SVN: 33047

SVN: 32811

- modify wstx-asl jar not to be found by SAXParserFactory.newInstance() method call (see http://docs.oracle.com/javase/7/docs/api/javax/xml/parsers/SAXParserFactory.html#newInstance())
- generate missing sha1 checksums for the new jars
- remove javax.xml.parsers.SAXParserFactory property from launch configs - it is no longer needed when wstx-asl is not found

SVN: 32299

SVN: 32261

SVN: 32243

SVN: 32129

SVN: 32088

SVN: 32086

SVN: 32031

SVN: 32025

SVN: 31921

SSDM-561: 'apply from' remote (http://svncisd.ethz.ch/repos/cisd/gradle/trunk/javaproject.gradle) replaced by local (../gradle/javaproject.gradle)

SVN: 31893

SSDM-515: Change eclipse default output dir to 'targets/www/WEB-INF/classes' for cifex, openbis, rtd_phosphonetx, and screening.

SVN: 31827

SVN: 31793

SVN: 31784

SVN: 31757

SSDM-427: dbin_id removed from tables role_assignments, material_types, experiment_types, sample_types, dataset_types, spaces

SVN: 31714

SSDM-360: Adding to core plugins of type data sources for technologies screening and proteomics properties for owner and password as variables to be defined in DSS and AS service.properties.

SVN: 31639

SVN: 31509

SVN: 31504

SVN: 31276

SWE-22 / SSDM-16: Launch configurations for generic/screening/proteomics openBIS prepared/compiled with gradle

SVN: 31269

SWE-22 / SSDM-16: Gradle based GWT prepare & GWT compile for generic, screening and proteomics openBIS

SVN: 31245

SVN: 30812

- fix dependencies (move EODSQL mappers to common project)
- add unit test for the maintenance task

SVN: 30807

SP-1090, SWE-22: GWT prepare/compile: remove cifex.jar from 'prepareGWT', add gwt-image-loader to compile dependencies of openbis, add prepare/compileGWT to rtd_phosphonetx, add gradle launch configs

SVN: 30317