Commits · 7149098cd50f9dc8a2ace333b394fb899828a44a · sispub / openbis

Apr 10, 2012
- SE-418 Genedata: Investigate support for Cellomics data · b666c299
  anttil authored 12 years ago
  
  SVN: 24842
  b666c299
Mar 26, 2012

Add methods getCamera, getEmissionTag, getExitationTag, getExpCam,... · 34e3b5fd

brinn authored 13 years ago

Add methods getCamera, getEmissionTag, getExitationTag, getExpCam, getFilterRef, getLightSRef, getWaveLength, getChannelDescription from Matt.

SVN: 24786

34e3b5fd

Dec 05, 2011
- LMS-2565 add possibility to read the image dimensions · 0e163a62
  gpawel authored 13 years ago
  
  SVN: 23869
  0e163a62
Nov 25, 2011
- minor: make running in debug mode easier · c8f5b146
  tpylak authored 13 years ago
  
  SVN: 23809
  c8f5b146
- LMS-2669 Screening: avoid reading tiff files with BioFormats when each file is one image · c93c6c51
  tpylak authored 13 years ago
  
  SVN: 23807
  c93c6c51
Oct 27, 2011
- bugfix: close flex files after reading the metadata · 46063a74
  kaloyane authored 13 years ago
  
  SVN: 23448
  46063a74
Oct 21, 2011
- minor: fix tests failures on Hudson · a933342b
  kaloyane authored 13 years ago
  
  SVN: 23380
  a933342b
- [LMS-2585] implemented: write a generic dropbox to import Opera Flex files · 8af0bea3
  kaloyane authored 13 years ago
  
  SVN: 23371
  8af0bea3
Oct 14, 2011
- minor: delete wrong test (tests the wrong image library) · 17d79f7d
  kaloyane authored 13 years ago
  
  SVN: 23324
  17d79f7d
- minor: refactoring to make debugging easier · 88dd66c0
  tpylak authored 13 years ago
  
  SVN: 23322
  88dd66c0
Oct 10, 2011
- LMS-2581 allow ImageJ to return 16 bit images · c507e0ae
  tpylak authored 13 years ago
  
  SVN: 23244
  c507e0ae
- LMS-2581 debug: make all libraries available in Java 1.5 · 2db699f0
  tpylak authored 13 years ago
  
  SVN: 23241
  2db699f0
Oct 06, 2011
- MINOR: Added .gitignore · cf343e06
  cramakri authored 13 years ago
  
  SVN: 23210
  cf343e06
Sep 27, 2011
- LMS-2526 better error message · eed74bd3
  tpylak authored 13 years ago
  
  SVN: 23101
  eed74bd3
Sep 23, 2011
- LMS-2545 images are not read as 16 bits which breaks transformations · 80b61948
  tpylak authored 13 years ago
  
  SVN: 23049
  80b61948
Sep 13, 2011
- LMS-2502 image transformations: server side + client URLs · b13f357d
  tpylak authored 13 years ago
  
  SVN: 22923
  b13f357d
Aug 22, 2011
- change: change visibility of method getLibraries() to public · 83d1ee12
  brinn authored 13 years ago
  
  SVN: 22582
  83d1ee12
Aug 17, 2011

fixing test which are broken after ugrading bioformats lib to version 4.3.1:... · 912daa63

felmer authored 13 years ago

fixing test which are broken after ugrading bioformats lib to version 4.3.1: Bioformats can handle PPM files. Meta-data extracted  from tif file changed a bit.

SVN: 22515

912daa63

Aug 05, 2011
- [LMS-2446] bugfix: prevent unsynchronized state changes in the BioFormat readers instances · 396894b4
  kaloyane authored 13 years ago
  
  SVN: 22343
  396894b4
Aug 04, 2011
- [LMS-2446] image readers must not keep opened file handles · ba6cd00d
  kaloyane authored 13 years ago
  
  SVN: 22342
  ba6cd00d
Jun 06, 2011
- LMS-2003 BioFormat readers are stateful. There will be created each time freshly. · 1c52554a
  felmer authored 13 years ago
  
  SVN: 21581
  1c52554a
May 31, 2011
- LMS-2265 add dependency check and fix dependency failure · 0246ff51
  felmer authored 13 years ago
  
  SVN: 21524
  0246ff51
- LMS-2265 tests fixed · 7537edcb
  felmer authored 13 years ago
  
  SVN: 21521
  7537edcb
- LMS-2265 move PPM file to invalid folder for bioformats · 0226d159
  felmer authored 13 years ago
  
  SVN: 21519
  0226d159
- LMS-2265 ImageReader API modified to support image containers. Introducing... · 386e8f41
  felmer authored 13 years ago
  
  LMS-2265 ImageReader API modified to support image containers. Introducing ImageID. More tests written. SVN: 21516
  386e8f41
May 18, 2011
- minor: remove deprecation warnings form test code · deceb428
  tpylak authored 13 years ago
  
  SVN: 21364
  deceb428
- LMS-2248 Modify library and utilities classes to handle DeltaVision, Leica,... · a93ac471
  felmer authored 13 years ago
  
  LMS-2248 Modify library and utilities classes to handle DeltaVision, Leica, Nikon and Zeiss image containers. Stand-alone classes for getting meta-data viewing and extracting images. SVN: 21353
  a93ac471
May 02, 2011
- minor: test method to print available readers · 9dfd5bc4
  tpylak authored 13 years ago
  
  SVN: 21088
  9dfd5bc4
Apr 20, 2011
- minor: removed redundant javadocs · a32cd17b
  kaloyane authored 13 years ago
  
  SVN: 20999
  a32cd17b
- minor: do not throw exceptions if a library does not exist · 0ade92ae
  kaloyane authored 13 years ago
  
  SVN: 20998
  0ade92ae
Apr 04, 2011
- minor: add a method to auto-discover a suitable reader by filename using the available libraries · 91e7736d
  kaloyane authored 13 years ago
  
  SVN: 20633
  91e7736d
Mar 31, 2011
- IMetaDataAwareImageReader methods moved up to IImageReader to avoid downcasting. · 0cdb50aa
  kaloyane authored 14 years ago
  
  SVN: 20606
  0cdb50aa
Mar 29, 2011
- minor: ignore .svn folders when listing (in)valid test images · b4eac899
  kaloyane authored 14 years ago
  
  SVN: 20556
  b4eac899
- minor: remove redundant class · be7df6d8
  kaloyane authored 14 years ago
  
  SVN: 20555
  be7df6d8
- minor: fix javadoc · e9c5fd94
  kaloyane authored 14 years ago
  
  SVN: 20546
  e9c5fd94
- minor: Use target JDK 1.5 when compiling image_readers · a460bccf
  kaloyane authored 14 years ago
  
  SVN: 20537
  a460bccf
- [LMS-2098] image_readers clean API (part2) · b9b31023
  kaloyane authored 14 years ago
  
  SVN: 20536
  b9b31023
Mar 25, 2011
- [LMS-2098] initial version of bioformat reader wrappers · e47b5104
  kaloyane authored 14 years ago
  
  SVN: 20494
  e47b5104
Mar 24, 2011
- add: add stubs of image readers for BioFormats library · 19ba0bbe
  brinn authored 14 years ago
  
  SVN: 20486
  19ba0bbe
- add: interfaces for image reading · 6e67b0aa
  brinn authored 14 years ago
  
  SVN: 20485
  6e67b0aa