SSDM-5639: If necessary save temporarily HDF5 file from the TAR archive in order to scan it for its content.

SVN: 38792

SVN: 38716

SVN: 38715

SSDM-5515: Extending Hdf5AwareHierarchicalContentFactory in order to handle content with multiple data sets (called tree roots). Making TarArchiver and MultiDataSetArchiver h5 folder flags aware.

SVN: 38712

SSDM-5400: Refactoring Hdf5AwareHierarchicalContentFactory. Remove unnecessary argument in constructor of PathinfoDatabaseFeedingTask. PathinfoDatabaseFeedingTaskTest rewritten by using real files as examples. Also tests for h5Folders and h5arFolders added.

SVN: 38640

SVN: 38637

SSDM-4575 : Upgrade to Gradle 3.x - updated gradlew to 3.5; using apache:commons-collection4 instead of apache:commons-collection (same version under different name for gradle 3.5 compatibility)

SVN: 38431

SSDM-5097: IHierarchicalContentNode.getChecksum() introduced in order provide checksum when searching for data set files in v3 API.

SVN: 38383

SVN: 38192

SVN: 38187

SSDM-5073: Upgrade to commons-collections 4.1 and commons-fileupload commons-fileupload 1.3.2. Package names changed from org.apache.commons.collections.* to org.apache.commons.collections4.*

SVN: 38117

SSDM-4975: Introducing DataSetAwareHierarchicalContent and DataSetAwareHierarchicalContentNode and make VirtualHierarchicalContent and its nodes public in order to distinguish files of physical data sets from files of link data set so that link data set files do not get a link in data set file view.

SVN: 38053

SVN: 37390

SVN: 37368

SSDM-4044: New DSS FS (FTP / CIFS) resolvers: change the way timestamp access is not modified for listing in old style ftp resolvers

SVN: 36966

SVN: 36818

SVN: 36816

SVN: 36545

SVN: 36537

SVN: 36461

SVN: 36314

SVN: 35758

SSDM-2362 : V3 AS API - global search - js-tests + change the json machinery to allow deserializing enums from Strings even if they have @JsonObject annotation

SVN: 35680

SVN: 35092

SVN: 35068

SSDM-2805: Refactoring WhiteList*Exporter into common. Using them in all spring application context files.

SVN: 35060

SSDM-2805: Introducing WhiteListCodebaseAwareObjectInputStream extending spring class CodebaseAwareObjectInputStream. Also introducing WhiteListHttpInvokerExporter (for openBIS) and WhiteListStreamSupportingHttpInvokerExporter (for CIFEX) which using WhiteListCodebaseAwareObjectInputStream. All published services using the new white-list based HttpInvokerExporter.

SVN: 35057

SVN: 34816

SVN: 34789

SVN: 34501

SSDM-2099 : V3 DSS API - add possiblity to download files and add more thorough tests of the whole dss api

SVN: 34335

SVN: 34249

SVN: 34137

SSDM-1930: Introducing MonitoredIOStreamCopier with unit tests and use it in multi data set archiving.

SVN: 34030

SSDM-1491: Using sis-jhdf5 lib instead of cisd-jhdf5. HDF5ContainerBasedHierarchicalContentNodeTest.testLegacyH5arFile added to test an old .h5ar container.

SVN: 33508

SSDM-1491: Using org.apache.commons.collections.map.ReferenceMap instead of HashMap for fileToReaderMap.

SVN: 33479

SSDM-1491: reverting using sis-jhdf5 lib instead of cisd-jhdf5 because it causes an error if path info database is switched of: "Error listing object '/': CRC checksum mismatch on index (links)."

SVN: 33478

SVN: 33477

SVN: 33462

SSDM-1450 : V3 AS API - define JS dependencies and make them easy to maintain - get rid of json property filter for FieldUpdateValue (it is not needed when we have JS dtos)

SVN: 33454