SSDM-2015 : New version with new master data script that adds just what is missing on current installation

SVN: 34558

SSDM-2015 : New version with new master data script that adds just what is missing on current installation

SVN: 34557

SSDM-2437 : V3 AS API - make it possible to search for samples without an experiment - withoutExperiment, withoutContainer

SVN: 34551

SSDM-2015 : New version with new master data script that adds just what is missing on current installation

SVN: 34550

SVN: 34549

SVN: 34547

SSDM-2279: Bug fixed in ResolutionChooserWidget: Take the first resolution of the available resolutions if old resolution doesn't exist.

SVN: 34545

SVN: 34544

SVN: 34540

SSDM-2015 : New version with new master data script that adds just what is missing on current installation

SVN: 34539

SVN: 34538

SVN: 34533

SVN: 34532

- works for all ILLUMINA_SEQUENCING samples, not only the Undetermined

SVN: 34531

SSDM-2294 : V3 AS API - paging and sorting of search results - do not serialize a comparator when a Set is sorted + improve performance by creating collections with initial capacity set

SVN: 34530

SVN: 34529

SVN: 34528

SVN: 34527

SVN: 34526

SVN: 34519

SSDM-2294 : V3 AS API - paging and sorting of search results - reduce the default cache size to 256m as openBIS is given 2g by default

SVN: 34518

SSDM-2294 : V3 AS API - paging and sorting of search results - make EHCache check memory consumption + extract cache key and entry to separate classes to make sure it does not follow inner class "outer this" reference during the calculation

SVN: 34517

SVN: 34516

SSDM-2328: The two problems described in the comment of the issue are solved. Many reference images of the system tests had to be changed. Most image changes are to small to be visible except merged images in MicroscopyImageDropboxTest.
IntensityRescaling.rescaleIntensityLevelTo8Bits: Improved algorithm which preserves color hue and satuarion.
ImageUtil: Version of rescale() with a representative color channel.
Hdf5ThumbnailGenerator.generateThumbnailInternally(): Using new ImageUtil.rescale function providing representative channel obtained from already available meta-data.
ImageChannelsUtils.rescaleIfNot8Bit: Parameter channelColorOrNull added. This is used to calculated correct levels (based on a threshold) and to re-scale intensities correctly.

SVN: 34515

SVN: 34514

SSDM-2294 : V3 AS API - paging and sorting of search results - fix a bug in paging when it invoked for a Collection that wasn't a List or Set

SVN: 34513

SSDM-2294 : V3 AS API - paging and sorting of search results - more tests and bugfix in SamplePE equals

SVN: 34512

SVN: 34511

SSDM-2294 : V3 AS API - paging and sorting of search results - sort options for the main entity kinds

SVN: 34510

- remove cached search results on logout
- make cache thread safe
- log cache operations

SVN: 34509

- remove cached search results on logout
- make cache thread safe
- log cache operations

SVN: 34508

SVN: 34507

SSDM-2293 : Polishing, labels don't appear for the positions where the current sample is, the rack is highlighted instead.

SVN: 34506

SVN: 34505

SVN: 34504

SVN: 34503

- include criteria in the cache key
- implement equals for criteria
- add basic automated tests

SVN: 34502

SVN: 34501

SSDM-2294 : V3 AS API - paging and sorting of search results - make it possible to sort/page/cache in all V3 searches and return SearchResult instead of a List

SVN: 34500

SVN: 34499