SVN: 8128

SVN: 7979

change: - 'DataStructureV1_1' loads a 'ExperimentIdentifierWithUUID'.

SVN: 7977

change: - Global code renamed in UUID all over the code.

SVN: 7925

SVN: 7918

SVN: 7914

change: move file system related classes from ch.systemsx.cisd.common.utilities to ch.systemsx.cisd.common.filesystem

SVN: 7906

[LMS-531] change: - 'database_instance_code' to 'database_instance' (same as experiment identifier).
- 'SampleWithOwner' should override 'equals' and 'hashCode' methods.
add: - 'instance_global_code'.

SVN: 7855

SVN: 7831

SVN: 7823

change: - Switch to BDS version 1.1 (v1.0 before).

SVN: 7815

- implement performance improvements for slow remote file shares in class HCSImageFormattedData
[LMS-472] Solve performance problem of BDS dataset creation and process triggering on trunk
merged from branch 8.04.x, improvements for 8.04.3

SVN: 7802

minor: - @Test class annotation on 'EqualsHashCodeTestCase' extensions.
change: - 'RoleWithCode' changed to 'RoleWithIdentifier' (code is not unique for group).
- 'PredicateStore' renamed to 'PredicateFactory' (Predicate instances no longer stored).

SVN: 7382

SVN: 7042

[LMS-460] change r6673 such that the library writes out TRUE and FALSE but accepts all capitalizations when reading

SVN: 6774

SVN: 6679

change: - BDS does not write 'TRUE' but 'true' for flag parameters.

SVN: 6673

SVN: 6638

- Some test data for the BDS Structure Checker.
- Run configuration file to start the BDS Structure from Eclipse.

SVN: 6443

SVN: 5797

SVN: 5785

bug concerning large plates fixed: refactoring Location.tryCreateLocationFromMatriyCoordinate() using ConversionUtils.parseSpreadsheetLocation()

SVN: 5730

SVN: 5686

SVN: 5656

SVN: 5539

add: - 'IProcedureAndDataTypeExtractor' parameter to 'IStorageProcessor.storeData'.

SVN: 5317

remove: - BDS 'ObservableType' and 'SampleType'. Correctness of given type code is checked by ETL server.
add: - 'DataStructureV1_0.setDataSet'.

SVN: 5312

add: - Unit tests for 'Sample' and 'DataSet'.
change: - format/format_code ---> format/code, format/format_variant ---> format/variant ('--->' means renamed).
- sample/sample_type_description ---> sample/type_description, sample/sample_type_code ---> sample/type_code, sample/sample_code ---> sample/code.
- Integration tests adapted (they should not fail).

SVN: 5288

- 'BDSStorageProcessorTest' put in the broken group (will be fixed very soon).
- Integration tests probably broken (will be fixed very soon).
add: - 'DataSet' to BDS library (but not yet used).

SVN: 5274

SVN: 5257

remove: - TODO regarding 'ChannelList'.
- 'ChannelList'.
add: - Unit test for 'Channel'.
- 'ChannelSetHelper' which helps to construct a sorted set of channels in 'HCSImageFileExtractor' implementations.

SVN: 5204

SVN: 4950

SVN: 4727

SVN: 3571

- ETL server Unit tests.

SVN: 3452

- Check for empty original data as we support it in 'HCS IMAGE' format.

SVN: 3267

- 'ILinkMaker' and its implementation 'HardLinkMaker'.
change:
- Use 'RecursiveHardLinkMaker' in 'LinkMakerProvider' resp. 'Directory'.

SVN: 3225

- 'createLocationFromPosition' ---> 'tryCreateLocationFromPosition'.
- 'createLocationFromMatrixCoordinate' ---> 'tryCreateLocationFromMatrixCoordinate'.

SVN: 3215

- Improvements done in 'BDSStorageProcessor'.

SVN: 3086

- Separation of concerns.

SVN: 3008