SSDM-1191: Introducing the configurable auto archiving policy GroupingPolicy which should replace ByExperiment and BySpace.

SVN: 33336

SSDM-1178: Introducing MultiDataSetUnarchivingMaintenanceTask and test. New column UNARCHIVING_REQUESTED in database table CONTAINERS. Modify MultiDataSetArchiver to request delayed unarchiving.

SVN: 33293

SVN: 33286

SVN: 33274

SSDM-1431 Fix the test expectations by removing remaining files only if they had a chance to be created

SVN: 33269

SSDM-1431 Fix the problem when data store server couldn't start if it was not installed on the same drive as default temp directory

SVN: 33268

SVN: 33220

SVN: 33217

SSDM-1337: introducing AbstractEntitySearchResultLocation and renaming DataSetFileSearchResultLocation attributes.

SVN: 33216

SVN: 33214

SSDM-1337: Enitity type and code added to EntityPropertySearchresultLocation and DataSetFileSearchResultLocation.

SVN: 33201

SVN: 33197

SVN: 33193

SSDM-1339: MultiDataSetArchiveCleaner and FileDeleter introduced, tested and used in MultiDataSetArchiver and MultiDataSetArchivingFinalizer.

SVN: 33191

SVN: 33162

SVN: 33090

SSDM-1277 bug found, test written and bug fixed: If MultiDataSetArchiver failed in replication case archiving status weren't updated.

SVN: 33089

SVN: 33088

SSDM-1277 MultiDataSetArchivingFinalizer: Bug fixed in case of failure. Re-archive same data sets again in case of failure. Adapt MultiDataSet*Test to changed log messages of WaitingHelper.

SVN: 33073

SSDM-1277 MultiDataSetArchiver: wait until enough free space implemented. Various improvements. MultiDataSetArchivingFinalizer: Using WaitingHelper and testing the finalizer.

SVN: 33069

SSDM-1277 move IProcessingPluginTask from generic.server.plugins.task to generic.shared to fix dependency violation

SVN: 33046

SSDM-1277 Finish archiving after replicate shows up. This is done by MultiDataSetArchivingFinalizer. Not yet tested.

SVN: 33029

SVN: 33022

SVN: 33020

SVN: 33013

SSDM-1324: Rename property 'data-set-command-executor-mapping' to 'data-set-command-queue-mapping'. Explain new property by comments in service.properties of the distribution.

SVN: 33010

SVN: 33004

SSDM-1290 - CKAN - publication webapp bugfixing - added caching of mesh terms in an http session - make a local directory check thread safe

SVN: 32989

SVN: 32982

SVN: 32919

SSDM-1174: Bug in TagArchiveCandidateDiscoverer fixed: Filter out data sets which are not in status ARCHIVED and present_in_archive = false

SVN: 32900

SSDM-1080: Add number of mismatch and total number of gaps and BLAST alignment positions to BLAST search results.

SVN: 32886

SVN: 32885

SVN: 32881

SVN: 32874

SVN: 32867

SSDM-1012 Archivation policy by space. Adding test for one more case + implementation of the missing case. refactor shuffling to use contstant seed for consistency

SVN: 32866

SVN: 32863

SVN: 32860

SVN: 32858