Commits · 1aaf562093e4d8a866e1fb2e5e4bb9d9e28b39d4 · sispub / openbis

Dec 15, 2016
- handle the case of re-registering a single lane · b3128fbb
  kohleman authored 8 years ago
  
  SVN: 37511
  b3128fbb
- SSDM-4187: ProjectIdentifier added to SampleUpdates and SampleUpdatesDTO · cd77a6e8
  felmer authored 8 years ago
  
  SVN: 37509
  cd77a6e8
- minor: small code cleanups · 47f39034
  kohleman authored 8 years ago
  
  SVN: 37508
  47f39034
- adapting description to changed folder structure on jenkins · c9d8aec1
  felmer authored 8 years ago
  
  SVN: 37501
  c9d8aec1
Dec 14, 2016
- added integration for aggregated FASTQC plots · 2e0292cc
  kohleman authored 8 years ago
  
  SVN: 37496
  2e0292cc
Dec 13, 2016
- bugfix: NextSeq String in invoice was never written · c4b26b74
  kohleman authored 8 years ago
  
  SVN: 37485
  c4b26b74
Dec 09, 2016

bug fix to handle not specified boolean values in the sample properties... · 49565430

kohleman authored 8 years ago

bug fix to handle not specified boolean values in the sample properties (happens when registering samples via Excel)

SVN: 37461

49565430

Dec 01, 2016

- regular samples need to be unique · 80b6654d

kohleman authored 8 years ago

- Pools not as these should have the lane information (same pool on different lanes)

SVN: 37423

80b6654d

Nov 30, 2016
- -added unified camel case naming for pi names · b5c42036
  kohleman authored 8 years ago
  
  -added lane info to the pools SVN: 37418
  b5c42036
Nov 29, 2016
- SSDM-4379: add 'evaluationDependsOn(':commonbase')' to all build.gradle · 3a632a2d
  felmer authored 8 years ago
  
  SVN: 37390
  3a632a2d
Nov 28, 2016
- - [x] if Notes, Received, Index2 empty, then do not show them · e43f7013
  kohleman authored 8 years ago
  
  - [x] Lower case for Pi Names - put more code into functions to make it more modular SVN: 37385
  e43f7013
- SSDM-4379: add 'commonbase' to all settings.gradle files · dd220f7d
  felmer authored 8 years ago
  
  SVN: 37368
  dd220f7d
Nov 25, 2016

- [x] PI, data space shift one column to the right · ae3b4b28

kohleman authored 8 years ago

- [x] Flow cell details shift one column to the right
- [x] Trimming of PI name
- [x] Above Run folder Name: "<Sequencer (HiSeq, MiSeq, NextSeq)> sequencing", bold, underlined
- [x] Samples head row two rows below Runfolder_name
- [x] changed zoom level to 133%
- [x] Remove column Flowcell:Lane
- [x] make Sample unique in the list
- [x] if Pool exits, list it below Runfolder_name

SVN: 37358

ae3b4b28

Nov 16, 2016
- Trigger for automatic access to the DBM bioinformaticians if a new DBM space is created · 2133c186
  kohleman authored 8 years ago
  
  SVN: 37323
  2133c186
Oct 12, 2016
- forgot to remove import · 3a189133
  kohleman authored 8 years ago
  
  SVN: 37157
  3a189133
- cannot use Java8 features... · ed64dc22
  kohleman authored 8 years ago
  
  SVN: 37156
  ed64dc22
- added a flag for listing the space white list · 24c59680
  kohleman authored 8 years ago
  
  SVN: 37155
  24c59680
Sep 20, 2016

- split rsync flags by default · c99e240d

kohleman authored 8 years ago

- use a different RsyncCopier to have full control over the flags
- added some time logging about the consumed time

SVN: 37089

c99e240d

Sep 16, 2016
- Fix null pointer exception · 788d6c01
  kohleman authored 8 years ago
  
  SVN: 37085
  788d6c01
- added better logging · dd639c0e
  kohleman authored 8 years ago
  
  SVN: 37083
  dd639c0e
Sep 14, 2016
- added an ugly hack, but this is the quickest fix for now.. · 05f76797
  kohleman authored 8 years ago
  
  SVN: 37080
  05f76797
- added possibility to provide pre-computed checksums in a txt file · 8df19b0f
  kohleman authored 8 years ago
  
  SVN: 37078
  8df19b0f
Sep 12, 2016
- - added dss root parameter · 987115f3
  kohleman authored 8 years ago
  
  - added status from the rsync copier to the logs SVN: 37052
  987115f3
Sep 07, 2016

- added rsync parameter fields · edebe336

kohleman authored 8 years ago

- allow tracking of samples without sending an email (new flag in command line)

SVN: 37038

edebe336

Sep 02, 2016

dirty commit: · 0c481be9

kohleman authored 8 years ago

- added the possibility to copy the tracked data sets to an extra folder
- this is configurable by several options

SVN: 37024

0c481be9

Aug 29, 2016
- little minor changes · 37e9ea06
  kohleman authored 8 years ago
  
  SVN: 37000
  37e9ea06
Aug 26, 2016
- bug fix for time stamps around midnight · 8eb2cd50
  kohleman authored 8 years ago
  
  SVN: 36992
  8eb2cd50
Jul 07, 2016
- - added FASTQ_SAMPLE_CODE to the properties · e6d4d447
  kohleman authored 8 years ago
  
  - always transfer DBM_* data SVN: 36805
  e6d4d447
Apr 27, 2016
- SSDM-3511: reformatted · cf6fbf75
  fedoreno authored 8 years ago
  
  SVN: 36322
  cf6fbf75
Apr 19, 2016
- added some error handling when the values are not available in the json file · a99f04c9
  kohleman authored 8 years ago
  
  SVN: 36226
  a99f04c9
Apr 18, 2016
- SSDM-3510 add explicite declaration of jython 2.7 · 0ba11757
  jakubs authored 8 years ago
  
  SVN: 36210
  0ba11757
Apr 15, 2016
- - bugfixes · aa838dfe
  kohleman authored 8 years ago
  
  - added readJSON SVN: 36186
  aa838dfe
Apr 01, 2016
- also added basecalling version to the data set type fastq_gz · 089bb6ca
  kohleman authored 9 years ago
  
  SVN: 36058
  089bb6ca
Mar 31, 2016
- drop box for error rate of phix, error rate and density based on illuminate · 23d3afca
  kohleman authored 9 years ago
  
  SVN: 36052
  23d3afca
Mar 24, 2016
- added renaming of files when de-multiplexed with an index mismatch parameter > 0 · 4f75e8be
  kohleman authored 9 years ago
  
  SVN: 36011
  4f75e8be
- added tracking of mismatches in index · cdb7beb3
  kohleman authored 9 years ago
  
  SVN: 35996
  cdb7beb3
Mar 23, 2016
- added shell script which calls the Jython script · a19dbb08
  kohleman authored 9 years ago
  
  SVN: 35993
  a19dbb08
Mar 08, 2016
- added direct link to the created flowcell in the postregistration-email · 0cb0842a
  kohleman authored 9 years ago
  
  SVN: 35836
  0cb0842a
- SSDM-3229, SSDM-3231: Update sis-jhdf5, sis-base and bioformats to latest versions. · 8f3581a6
  anttil authored 9 years ago
  
  SVN: 35828
  8f3581a6
Feb 29, 2016
- change svn url from svncisd -> svnsis · 70923ee0
  felmer authored 9 years ago
  
  SVN: 35758
  70923ee0