SP-37, BIS-27: Move OpenBisServiceFactory from package generic.shared.api.v1 to generic.shared because it has nothing to do with any API.

SVN: 25390

SP-67 / BIS-35: Add Jackson annotations to all classes used in JSON-RPC interfaces (change @JsonTypeName to @JsonObject to make the annotation visible in JavaDoc)

SVN: 25389

SP-37, BIS-27: Removing an unnecessary comma in a JSON annotation of SearchCriteria which is causing a hiccup when running Javadoc tool.

SVN: 25388

SP-37, BIS-27: Rename Raw Data API to Proteomics API and move distribution outside server distribution.

SVN: 25387

SVN: 25386

BIS-35 / SP-68: Create unit test checking that all required Jackson annotations are present and consistent. 3 tests still disabled because of annotation problems.

SVN: 25385

SVN: 25384

SVN: 25383

SVN: 25382

SVN: 25381

SP-45, BIS-21 refactor put method to fail with the informative message if user calls it with inappropriate argument

SVN: 25380

SVN: 25379

SVN: 25378

SP-47, BIS-36: AbstractArchiverProcessingPlugin refactored and simplified. No paranoia check for archiving. Many tests added to AbstractArchiverProcessingPluginTest.

SVN: 25377

SVN: 25376

SVN: 25375

SVN: 25373

SVN: 25372

BIS-35 / SP-68: Added tests checking the Jackson annotations. The tests are disabled as the missing annotations have not been added yet.

SVN: 25371

SVN: 25370

SVN: 25365

fix stack overflow bug in cases where children and parents should be fetched for a set of samples where at least two samples are child or parent to each other.

SVN: 25364

SVN: 25358

SVN: 25357

SVN: 25356

SVN: 25355

SVN: 25354

SVN: 25353

SVN: 25352

SVN: 25350

SVN: 25349

SVN: 25348

SVN: 25347

SVN: 25345

SVN: 25344

SVN: 25343

SVN: 25342

SVN: 25341

SVN: 25340

SVN: 25339