SSDM-13300: Change how data_set search command works, added functionality to download command to read data from the input csv file. Fixed documentation.

SSDM-13300: renamed type param in search command. Refactored download command to perform checksum check of files

SSDM-13300: oBIS 0.4.0-rc2. Fixes to get parents/children command. Updated documentation. Changed way to modify global config.json to no longer require git and git-annex

SSDM-13330: Removed get/set/clear boolean flags, added enum for differentiating these operations. Prepared PhysicalDadaMgmt for implementation of object/collection get/set

SSDM-13330: Added PhysicalDataMgmt for handling data stored in DSS, implemented init command for physical data. Refactored code.