SVN: 20063

SVN: 19020

SVN: 17386

SVN: 17240

refactor: choose name and update javadoc to clearly indicate that that Location.tryCreateLocationFromMatrixCoordinate() takes a transposed well code

SVN: 17065

[LMS-1529] create wells on the fly when datasets are registered before the library is registered; allow to "update" already existing samples on "Library" registration

SVN: 16251

SVN: 15031

LMS-1423 'group_code' -> 'space_code', also all constants, variable names, method names changed accordingly

SVN: 14963

SVN: 14920

SVN: 14853

SE-201 LMC: 1. do not follow symbolic links when deleting directories 2. maintain original file extension in BDS 3. servlet which splits images 4. specific tiles arrangement

SVN: 14598

SVN: 14487

SVN: 14484

LMS-1275 1. Screening pilot: plate visualisation 2. fixes and improvements in BDS 3. make GenericSampleViewer extendable 4. Allow to list material properties with EODSQL

SVN: 13740

SVN: 11584

move: AbstractFileSystemTestCase from common.filesystem to base.tests

SVN: 10365

SVN: 10364

SVN: 8596

SVN: 8298

SVN: 8206

SVN: 8128

SVN: 7979

change: - 'DataStructureV1_1' loads a 'ExperimentIdentifierWithUUID'.

SVN: 7977

change: - Global code renamed in UUID all over the code.

SVN: 7925

SVN: 7918

SVN: 7914

change: move file system related classes from ch.systemsx.cisd.common.utilities to ch.systemsx.cisd.common.filesystem

SVN: 7906

[LMS-531] change: - 'database_instance_code' to 'database_instance' (same as experiment identifier).
- 'SampleWithOwner' should override 'equals' and 'hashCode' methods.
add: - 'instance_global_code'.

SVN: 7855

SVN: 7831

SVN: 7823

change: - Switch to BDS version 1.1 (v1.0 before).

SVN: 7815

- implement performance improvements for slow remote file shares in class HCSImageFormattedData
[LMS-472] Solve performance problem of BDS dataset creation and process triggering on trunk
merged from branch 8.04.x, improvements for 8.04.3

SVN: 7802

minor: - @Test class annotation on 'EqualsHashCodeTestCase' extensions.
change: - 'RoleWithCode' changed to 'RoleWithIdentifier' (code is not unique for group).
- 'PredicateStore' renamed to 'PredicateFactory' (Predicate instances no longer stored).

SVN: 7382

SVN: 7042

[LMS-460] change r6673 such that the library writes out TRUE and FALSE but accepts all capitalizations when reading

SVN: 6774

SVN: 6679

change: - BDS does not write 'TRUE' but 'true' for flag parameters.

SVN: 6673

SVN: 6638

- Some test data for the BDS Structure Checker.
- Run configuration file to start the BDS Structure from Eclipse.

SVN: 6443

SVN: 5797