change: - 'BooleanOrUnknown.getByNiceRepresentation' renamed to 'BooleanOrUnknow.resolve'.

remove: - 'register-controls', 'register-oligos' and 'register-viruses' commands.

SVN: 8078

bds/source/java/ch/systemsx/cisd/bds/DataSet.java

@@ -177,7 +177,7 @@ public final class DataSet implements IStorable
         BooleanOrUnknown completeFlag;
         try
         {
-            completeFlag = BooleanOrUnknown.getByNiceRepresentation(strIsComplete);
+            completeFlag = BooleanOrUnknown.resolve(strIsComplete);
         } catch (final IllegalArgumentException ex)
         {
             throw new DataStructureException(ex.getMessage());

common/source/java/ch/systemsx/cisd/common/types/BooleanOrUnknown.java

@@ -43,7 +43,7 @@ public enum BooleanOrUnknown
         return niceRepresentation;
     }
 
-    public final static BooleanOrUnknown getByNiceRepresentation(final String niceRepresentation)
+    public final static BooleanOrUnknown resolve(final String niceRepresentation)
     {
         if (niceRepresentation.equals("FALSE"))
         {