Rename legacy name from the reporting plugin api

SVN: 36430

openbis_standard_technologies/dist/core-plugins/eln-lims/1/as/webapps/eln-lims/html/js/server/ServerFacade.js

@@ -497,7 +497,7 @@ function ServerFacade(openbisServer) {
  	//
  	this.customELNApi = function(parameters, callbackFunction, service) {
  		if(!service) {
- 			service = "newbrowserapi";
+ 			service = "eln-lims-api";
  		}
  		
  		var dataStoreCode = profile.getDefaultDataStoreCode();
@@ -523,7 +523,7 @@ function ServerFacade(openbisServer) {
  	
  	this.createReportFromAggregationService = function(dataStoreCode, parameters, callbackFunction, service) {
  		if(!service) {
- 			service = "newbrowserapi";
+ 			service = "eln-lims-api";
  		}
  		if(!parameters) {
  			parameters = {};

openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/lib/htmlcleaner-2.16-licence.txt

+Copyright (c) 2006-2015, the HTMLCleaner project
+All rights reserved.
+
+Redistribution and use of this software in source and binary forms,
+with or without modification, are permitted provided that the following
+conditions are met:
+
+* Redistributions of source code must retain the above
+  copyright notice, this list of conditions and the
+  following disclaimer.
+
+* Redistributions in binary form must reproduce the above
+  copyright notice, this list of conditions and the
+  following disclaimer in the documentation and/or other
+  materials provided with the distribution.
+
+* The name of HtmlCleaner may not be used to endorse or promote
+  products derived from this software without specific prior
+  written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.
+
+You can contact Vladimir Nikic by sending e-mail to
+nikic_vladimir@yahoo.com. Please include the word "HtmlCleaner" in the
+subject line.
\ No newline at end of file

openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/lib/plasmapper-source/FRP1955.fasta

+>Act1_mkokappa  (5632 bp)
+GACGTCGAAAGAACGCGGCATTAGCAACATTTGCGAAGCGAACGATTTTGCGAACTGCTATTAATTAActctGGCGCGcc
+actactttttggaactcttgttgttctttggagttcaatgcgtccatctttacagtcctgtcttattgttcttgatttgt
+gccccgtaaaatactgttacttggttctggcgaggtattggatagttcctttttataaaggccatgaagGtttttctttc
+caattttttttttttcgtcattatagaaatcattacgaccgagattcccggCATATGGTAATAACTGATATAATTAAATT
+GAAGCTCTAATTTGTGAGTTTAGTATACATGCATTTACTTATAATACAGTTTTTTAGTTTTGCTGGCCGCATCTTCTCAA
+ATATGCTTCCCAGCCTGCTTTTCTGTAACGTTCACCCTCTACCTTAGCATCCCTTCCCTTTGCAAATAGTCCTCTTCCAA
+CAATAATAATGTCAGATCCTGTAGAGACCACATCATCCACGGTTCTATACTGTTGACCCAATGCGTCTCCCTTGTCATCT
+AAACCCACACCGGGTGTCATAATCAACCAATCGTAACCTTCATCTCTTCCACCCATGTCTCTTTGAGCAATAAAGCCGAT
+AACAAAATCTTTGTCGCTCTTCGCAATGTCAACAGTACCCTTAGTATATTCTCCAGTAGCTAGGGAGCCCTTGCATGACA
+ATTCTGCTAACATCAAAAGGCCTCTAGGTTCCTTTGTTACTTCTTCCGCCGCCTGCTTCAAACCGCTAACAATACCTGGG
+CCCACCACACCGTGTGCATTCGTAATGTCTGCCCATTCTGCTATTCTGTATACACACGCAGAGTACTGCAATTTGACTGT
+ATTACCAATGTCAGCAAATTTTCTGTCTTCGAAGAGTAAAAAATTGTACTTGGCGGATAATGCCTTTAGCGGCTTAACTG
+TGCCCTCCATGGAAAAATCAGTCAAGAGATCCACATGTGTTTTTAGTAAACAAATTTTGGGACCTAATGCTTCAACTAAC
+TCCAGTAATTCCTTGGTGGTACGAACATCCAATGAAGCACACAAGTTTGTTTGCTTTTCGTGCATGATATTAAATAGCTT
+GGCAGCAACAGGACTAGGATGAGTAGCAGCACGTTCCTTATATGTAGCTTTCGACATGATTTATCTTCGTTTCCTGCACG
+TTTTTGTTCTGTGCAGTTGGGTTAAGAATACTGGGCAATTTCATGTTTCTTCAACACCACCTATGCGTATATATACCAAT
+CTAAGTCTGTGCTCCTTCCTTCGTTCTTCCTTCTGCTCGGAGATTACCGAATCAAAAAAATTTCAAAGAAACCGGAATCA
+AAAAAAAGAACAAAAAAAAAAAAGATGAATGAAAAGCGATCGGATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGG
+TTTTCCCAGTCACGACGTTGTAAAACGACGGCCAGTGAATTGTAATACGACTCACTATAGGGCGAATTGGAGAAACAGAA
+TAATATATAAACCTGTATAATATAACCTTGAAGACTATATTTCTTTTCGCGGCCGCCTATAGGGCGAATTGGAGCTCCAC
+CGCGGTGGCGGCCGCTCTAGAGAAGCGGGTAAGCTGCCACAGCAATTAATGCACAACATTTAACCTACATTCTTCCTTAT
+CGGATCgTCAAAACCCTTAAAAAgATATGCCTCACCCTAACATATTTTCCAATTAACCCTCAATATTTCTCTGTCACCCG
+GCCTCTATTTTCCATTTTCTTCTTTACCCGCCACGCGTTTTTTTCTTTCAAATTTTTTTCTTCCTTCTTCTTTTTCTTCC
+ACGTCCTCTTGCATAAATAAATAAACCGTTTTGAAACCAAACTCGCCTCTCTCTCTCCTTTTTGAAATATTTTTGGGTTT
+GTTTGATCCTTTCCTTCCCAATCTCTCTTGTTTAATATATATTCATTTATATCACGCTCTCTTTTTATCTTCCTTTTTTT
+CCTCTCTCTTGTATTCTTCCTTCCCCTTTCTACTCAAACCAAGAAGAAAAAGAAAAGGTCAATCTTTGTTAAAGAATAGG
+ATCTTCTACTACATCAGCTTTTAGATTTTTCACGCTTACTGCTTTTTTCTTCCCAAGATCGAAAATTTACTGAATTAACA
+ACTAGTGGATCCCCCGGGCTGCAGGAATTCGATATCAagctTATGAGATCTGTTTCTGTTATTAAGCCAGAAATGAAGAT
+GAGATATTACATGGATGGTTCTGTTAATGGTCATGAATTTACTATTGAAGGTGAAGGTACTGGTAGACCATATGAAGGTC
+ATCAAGAAATGACTTTGAGAGTTACTATGGCTGAAGGTGGTCCAATGCCATTTGCTTTTGATTTGGTTTCTCATGTTTTT
+TGTTACGGTCATAGAGTTTTTACAAAGTACCCAGAAGAAATTCCAGATTACTTTAAGCAAGCATTTCCAGAAGGTTTGTC
+TTGGGAAAGATCATTGGAATTTGAAGATGGTGGTTCTGCTTCTGTTTCTGCTCATATTTCTTTGAGAGGTAACACTTTTT
+ACCATAAGTCTAAGTTTACTGGTGTTAATTTTCCAGCTGATGGTCCAATTATGCAAAATCAATCTGTTGATTGGGAACCA
+TCTACTGAAAAGATTACTGCTTCTGATGGTGTTTTGAAAGGTGATGTTACAATGTACTTGAAATTGGAAGGTGGTGGTAA
+TCATAAATGTCAATTCAAGACTACTTATAAAGCTGCTGAAAAGATTTTGGAAATGCCAGGTGATCATTATATTGGTCATA
+GATTGGTTAGAAAGACTGAAGGTAACATTACTGAACAAGTTGAAGATGCTGTTGCTCATTCTGGATCCTAGCtcgaGACA
+GGCCCCTTTTCCTTTGTCtATATCATGTAATTAGTTATGTCACGCTTACATTCACGCCCTCCTCCCACATCCGCTCTAAC
+CGAAAAGGAAGGAGTTAGACAACCTGAAGTCTAGGTCCCTATTTATTTTTTTTAATAGTTATGTTAGTATTAAGAACGTT
+ATTTATATTTCAAATTTTTCTTTTTTTTCTGTACAAACGCGTGTACGCATGTAACATTATACTGAAAACCTTGCTTGAGA
+AGGTTTTGGGACGCTCGAAGGCTTTAATTTGCAAGgTTCGCAGTTTACACTCTCATCGTCGCTCTCATCATCGCTTCCGT
+TGTTGTTTTCCTTAGTAGCGTCTGCTTGGTACCCAGCTTCGGCCGTATTTACAGATAACGATGTCGTTATTATATATATA
+TATATATATTGTCACTTGTACCCAGCTTTTGTTCCCTTTAGTGAGGGTTAATTTCGAGCTTGGCGTAATCATGGTCATAG
+CTGTTTCCTGTGTGAAATTGTTATCCGCTCACAACAGCTGgatgaattgaaTagctttatggaccctgaaaccacagcca
+cattaaccttctttgatggtcaaaacttatccttcaccataaatatgcctcgcaaaaaaggtaattaacatatatagaat
+tacattatttatgaaatatcatcactatctcttagcatctttaatccttttctacatcagataacttcggtttgttatca
+tcgtctgtattgtcatcaattggCGCGCCtctcCCTGCAGGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTG
+CGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCA
+CTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGG
+CCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGC
+TCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCC
+TGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCT
+GTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGC
+GCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAG
+GATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGAACAG
+TATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACC
+GCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATCTCAAGAAGATCCTTTGATCTT
+TTGTTTAAACCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAG
+GATCTTCACCTAGATCCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAACTTGGTCTGACA
+GTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTTCGTTCATCCATAGTTGCCTGACTCCCCGTC
+GTGTAGATAACTACGATACGGGAGGGCTTACCATCTGGCCCCAGTGCTGCAATGATACCGCGAGACCCACGCTCACCGGC
+TCCAGATTTATCAGCAATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTCCATCC
+AGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTTGCGCAACGTTGTTGCCATTGCTACA
+GGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATC
+CCCCATGTTGTGCAAAAAAGCGGTTAGCTCCTTCGGTCCTCCGATGGTTGTCAGAAGTAAGTTGGCCGCAGTGTTATCAC
+TCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATGCTTTTCTGTGACTGGTGAGTACTCA
+ACCAAGTCATTCTGAGAATAGTGTATGCGGCGACCGAGTTGCTCTTGCCCGGCGTCAATACGGGATAATACCGCGCCACA
+TAGCAGAACTTTAAAAGTGCTCATCATTGGAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATCTTACCGCTGTTGAGAT
+CCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCAGCATCTTTTACTTTCACCAGCGTTTCTGGGTGAGCAAAA
+ACAGGAAGGCAAAATGCCGCAAAAAAGGGAATAAGGGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATA
+TTATTGAAGCATTTATCAGGGTTATTGTCTCATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAACAAATAGGGG
+TTCCGCGCACATTTCCCCGAAAAGTGCCACCT

openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/lib/plasmapper-source/PlasmapperConnector.java

+package ch.ethz.ssdm.eln;
+
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.net.URL;
+
+import org.apache.commons.io.FileUtils;
+import org.eclipse.jetty.client.HttpClient;
+import org.eclipse.jetty.client.api.ContentProvider;
+import org.eclipse.jetty.client.api.ContentResponse;
+import org.eclipse.jetty.client.api.Request;
+import org.eclipse.jetty.client.util.StringContentProvider;
+import org.eclipse.jetty.http.HttpStatus;
+
+import ch.systemsx.cisd.common.filesystem.FileUtilities;
+import ch.systemsx.cisd.common.http.JettyHttpClientFactory;
+
+public class PlasmapperConnector
+{
+    public static void main(String[] args) throws Exception {
+        //URL to the server without the dash '/'
+        String serverURL = "http://wishart.biology.ualberta.ca";
+        //Path to input fasta file
+        String fastaInputFilePath = "FRP1955.fasta";
+        //Path to output svg file
+        String svgOutputFilePath = "FRP1955.svg";
+        //Path to output html file
+        String htmlOutputFilePath = "FRP1955.html";
+        
+        downloadPlasmidMap(
+                serverURL,
+                fastaInputFilePath,
+                svgOutputFilePath,
+                htmlOutputFilePath);
+    }
+    
+    
+    private static final String VECTOR_MAP_URL = "/PlasMapper/servlet/DrawVectorMap";
+    
+    public static void downloadPlasmidMap(
+            final String serverURL,
+            final String fastaInputFilePath,
+            final String svgOutputFilePath,
+            final String htmlOutputFilePath) {
+        HttpClient client = JettyHttpClientFactory.getHttpClient();
+        Request requestEntity = client.newRequest(serverURL + VECTOR_MAP_URL).method("POST");
+        
+        try {
+            setPlasmidFormOptions(requestEntity, fastaInputFilePath);
+            ContentResponse contentResponse = requestEntity.send();
+            
+            int statusCode = contentResponse.getStatus();
+            
+            if (statusCode != HttpStatus.Code.OK.getCode())
+            {
+                throw new RuntimeException("Status Code was " + statusCode + " instead of " + HttpStatus.Code.OK.getCode());
+            }
+            
+            String svgFileURLPath = contentResponse.getContentAsString();
+            if (svgFileURLPath == null || !svgFileURLPath.contains("PlasMapper")) {
+                throw new RuntimeException("PlasMapper service failed returning incorrect path to file: " + svgFileURLPath);
+            } else if (svgFileURLPath.endsWith("\r\n"))
+            {
+                svgFileURLPath = svgFileURLPath.substring(0, svgFileURLPath.lastIndexOf("\r\n"));
+            } else if (svgFileURLPath.endsWith("\n"))
+            {
+                svgFileURLPath = svgFileURLPath.substring(0, svgFileURLPath.lastIndexOf("\n"));
+            }
+//            System.out.println("Downloading SVG file: " + serverURL + "/" + svgFileURLPath + " to " + svgOutputFile);
+            
+            if(svgFileURLPath.startsWith("/")) {
+                svgFileURLPath = svgFileURLPath.substring(1);
+            }
+            URL svgFileURL = new URL(serverURL + "/" + svgFileURLPath);
+            
+            File svgOutputFile = new File(svgOutputFilePath);
+            FileUtils.copyURLToFile(svgFileURL, svgOutputFile);
+//            System.out.println("Generating HTML file: " + htmlOutputFile);
+            String htmlFileContents = "<html>"
+                                    + "<head>"
+                                    + "<meta http-equiv=\"content-type\" content=\"text/html; charset=ISO-8859-1\">"
+                                    + "<title>PlasMapper - Graphic Map</title>"
+                                    + "</head>"
+                                    + "<body>"
+                                    + "<embed src=\"" + svgOutputFile.getName() + "\" type=\"image/svg+xml\" pluginspage=\"http://www.adobe.com/svg/viewer/install/\" id=\"Panel\" height=\"1010\" width=\"1010\">"
+                                    + "<br>"
+                                    + "<a href=\"" + svgOutputFile.getName() + "\" target=\"_blank\">Download Link</a>"
+                                    + "</body>"
+                                    + "</html>";
+            FileUtils.writeStringToFile(new File(htmlOutputFilePath), htmlFileContents, "UTF-8");
+        } catch(Exception ex) {
+            throw new RuntimeException(ex);
+        } finally {
+            
+        }
+    }
+    
+    
+    private static void setPlasmidFormOptions(final Request requestEntity, final String fastaInputFile) throws FileNotFoundException
+    {
+        requestEntity.param("vendor", "Amersham%20Pharmacia");
+        requestEntity.param("showOption", "1");
+        requestEntity.param("showOption", "2");
+        requestEntity.param("showOption", "3");
+        requestEntity.param("showOption", "4");
+        requestEntity.param("showOption", "5");
+        requestEntity.param("showOption", "6");
+        requestEntity.param("showOption", "7");
+        requestEntity.param("showOption", "8");
+        requestEntity.param("showOption", "9");
+        requestEntity.param("restriction", "1");
+        requestEntity.param("orfLen", "200");
+        requestEntity.param("strand", "1");
+        requestEntity.param("strand", "2");
+        requestEntity.param("dir1", "1");
+        requestEntity.param("dir2", "1");
+        requestEntity.param("dir3", "1");
+        requestEntity.param("dir4", "1");
+        requestEntity.param("dir5", "1");
+        requestEntity.param("dir6", "1");
+        requestEntity.param("category1", "origin_of_replication");
+        requestEntity.param("category2", "origin_of_replication");
+        requestEntity.param("category3", "origin_of_replication");
+        requestEntity.param("category4", "origin_of_replication");
+        requestEntity.param("category5", "origin_of_replication");
+        requestEntity.param("category6", "origin_of_replication");
+        requestEntity.param("scheme", "0");
+        requestEntity.param("shading", "0");
+        requestEntity.param("labColor", "0");
+        requestEntity.param("labelBox", "1");
+        requestEntity.param("labels", "0");
+        requestEntity.param("innerLabels", "0");
+        requestEntity.param("legend", "0");
+        requestEntity.param("arrow", "0");
+        requestEntity.param("tickMark", "0");
+        requestEntity.param("mapTitle", "");
+        requestEntity.param("comment", "Created using PlasMapper");
+        requestEntity.param("imageFormat", "SVG");
+        requestEntity.param("imageSize", "1000 x 1000");
+        requestEntity.param("backbone", "medium");
+        requestEntity.param("arc", "medium");
+        requestEntity.param("biomoby", "true");
+        
+        final String CRLF = "\r\n";
+        final String BOUNDARY = "MMMMM___MP_BOUNDARY___MMMMM";
+        final String FILE_PART_NAME = "fastaFile";
+        
+        File fastaFile = new File(fastaInputFile);
+        String fileContent = FileUtilities.loadToString(fastaFile);
+        ContentProvider content = new StringContentProvider("--" + BOUNDARY + CRLF
+                + "Content-Disposition: form-data; name=\"" + FILE_PART_NAME + "\"; filename=\"" 
+                + fastaFile.getName() + "\"" + CRLF
+                + "Content-Type: application/octet-stream" + CRLF + CRLF
+                + fileContent + CRLF + "--" + BOUNDARY + "--" + CRLF);
+        requestEntity.content(content, "multipart/form-data; boundary=" + BOUNDARY);
+    }
+}

openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/lib/plasmapper-source/PlasmapperConnector.sh

+#!/bin/bash
+#URL to the server without the dash '/'
+serverURL=http://wishart.biology.ualberta.ca
+#Path to input fasta file
+fastaInputFile=FRP1955.fasta
+#Path to output svg file
+svgOutputFile=FRP1955.svg
+#Path to output html file
+htmlOutputFile=FRP1955.html
+
+echo Asking service $serverURL/PlasMapper/servlet/DrawVectorMap to generate the SVG file
+imageURL=$(curl -k -F "fastaFile=@$fastaInputFile;type=application/octet-stream" \
+-F "vendor=Amersham%20Pharmacia" \
+-F "Submit=Graphic Map" \
+-F "showOption=1" \
+-F "showOption=2" \
+-F "showOption=3" \
+-F "showOption=4" \
+-F "showOption=5" \
+-F "showOption=6" \
+-F "showOption=7" \
+-F "showOption=8" \
+-F "showOption=9" \
+-F "restriction=1" \
+-F "orfLen=200" \
+-F "strand=1" \
+-F "strand=2" \
+-F "dir1=1" \
+-F "dir2=1" \
+-F "dir3=1" \
+-F "dir4=1" \
+-F "dir5=1" \
+-F "dir6=1" \
+-F "category1=origin_of_replication" \
+-F "category2=origin_of_replication" \
+-F "category3=origin_of_replication" \
+-F "category4=origin_of_replication" \
+-F "category5=origin_of_replication" \
+-F "category6=origin_of_replication" \
+-F "scheme=0" \
+-F "shading=0" \
+-F "labColor=0" \
+-F "labelBox=1" \
+-F "labels=0" \
+-F "innerLabels=0" \
+-F "legend=0" \
+-F "arrow=0" \
+-F "tickMark=0" \
+-F "comment=Created using PlasMapper" \
+-F "imageFormat=SVG" \
+-F "imageSize=1000 x 1000" \
+-F "backbone=medium" \
+-F "arc=medium" \
+-F "biomoby=true" \
+$serverURL/PlasMapper/servlet/DrawVectorMap
+)
+echo Downloading SVG file: $serverURL/$imageURL
+curl -o $svgOutputFile $serverURL/$imageURL
+echo Generating HTML file: $htmlOutputFile
+echo "<html><head><meta http-equiv=\"content-type\" content=\"text/html; charset=ISO-8859-1\"><title>PlasMapper - Graphic Map</title></head><body><embed src=\"$svgOutputFile\" type=\"image/svg+xml\" pluginspage=\"http://www.adobe.com/svg/viewer/install/\" id=\"Panel\" height=\"1010\" width=\"1010\"><br><a href=\"$svgOutputFile\" target=\"_blank\">Download Link</a></body></html>" > $htmlOutputFile
\ No newline at end of file

openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/plugin.properties

+label = New Browser API
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonIngestionService
+script-path = script.py