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Commit f9ea55fa authored by cramakri's avatar cramakri
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CCS-30 SP-488 : Refactored generation of navigation layer to remove code duplication 

SVN: 28283
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openbis-ipad/ipad-example-data/ipad-ui-ylab/1/dss/reporting-plugins/ipad-read-service-v1/ipad_read.py
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...@@ -270,190 +270,36 @@ def properties_for_entity(entity, property_definitions, prop_names_set): ...@@ -270,190 +270,36 @@ def properties_for_entity(entity, property_definitions, prop_names_set):
def marquee_image_spec_for_url(image_url): def marquee_image_spec_for_url(image_url):
return { 'MARQUEE' : { 'URL' : image_url } } return { 'MARQUEE' : { 'URL' : image_url } }
def navigation_layer(oligos, antibodies, chemicals, protocols, medias, pcrs, buffers, plasmids, yeasts, bacterias, enzymes, westernBlottings): def navigation_layer_simple(summary_header, summary, code, children):
oligo_dict = {} nav_dict = {}
oligo_dict["SUMMARY_HEADER"] = "oligo" nav_dict["SUMMARY_HEADER"] = summary_header
oligo_dict["SUMMARY"] = "Oligos in YeastLab" nav_dict["SUMMARY"] = summary
oligo_dict['PERM_ID'] = "OLIGO" nav_dict['PERM_ID'] = code
refcon_oligo = {} refcon_nav = {}
refcon_oligo['code'] = "OLIGO" refcon_nav['code'] = code
refcon_oligo['entityKind'] = 'NAVIGATION' refcon_nav['entityKind'] = 'NAVIGATION'
refcon_oligo['entityType'] = 'NAVIGATION' refcon_nav['entityType'] = 'NAVIGATION'
oligo_dict['REFCON'] = json_encoded_value(refcon_oligo) nav_dict['REFCON'] = json_encoded_value(refcon_nav)
oligo_dict['CATEGORY'] = None nav_dict['CATEGORY'] = None
children = [oligo.getPermId() for oligo in oligos] children_permids = [entity.getPermId() for entity in children]
oligo_dict['CHILDREN'] = json_encoded_value(children) nav_dict['CHILDREN'] = json_encoded_value(children_permids)
oligo_dict['PROPERTIES'] = json_encoded_value([]) nav_dict['PROPERTIES'] = json_encoded_value([])
oligo_dict['ROOT_LEVEL'] = True nav_dict['ROOT_LEVEL'] = True
return nav_dict
antibody_dict = {}
antibody_dict["SUMMARY_HEADER"] = "antibody"
antibody_dict["SUMMARY"] = "Antibodies in YeastLab"
antibody_dict['PERM_ID'] = "ANTIBODY"
refcon_antibody = {}
refcon_antibody['code'] = "ANTIBODY"
refcon_antibody['entityKind'] = 'NAVIGATION'
refcon_antibody['entityType'] = 'NAVIGATION'
antibody_dict['REFCON'] = json_encoded_value(refcon_antibody)
antibody_dict['CATEGORY'] = None
children = [antibody.getPermId() for antibody in antibodies]
antibody_dict['CHILDREN'] = json_encoded_value(children)
antibody_dict['PROPERTIES'] = json_encoded_value([])
antibody_dict['ROOT_LEVEL'] = True
chemical_dict = {}
chemical_dict["SUMMARY_HEADER"] = "chemical"
chemical_dict["SUMMARY"] = "Chemicals in YeastLab"
chemical_dict['PERM_ID'] = "CHEMICAL"
refcon_chemical = {}
refcon_chemical['code'] = "CHEMICAL"
refcon_chemical['entityKind'] = 'NAVIGATION'
refcon_chemical['entityType'] = 'NAVIGATION'
chemical_dict['REFCON'] = json_encoded_value(refcon_chemical)
chemical_dict['CATEGORY'] = None
children = [chemical.getPermId() for chemical in chemicals]
chemical_dict['CHILDREN'] = json_encoded_value(children)
chemical_dict['PROPERTIES'] = json_encoded_value([])
chemical_dict['ROOT_LEVEL'] = True
protocol_dict = {}
protocol_dict["SUMMARY_HEADER"] = "protocol"
protocol_dict["SUMMARY"] = "Protocols in YeastLab"
protocol_dict['PERM_ID'] = "GENERAL_PROTOCOL"
refcon_protocol = {}
refcon_protocol['code'] = "GENERAL_PROTOCOL"
refcon_protocol['entityKind'] = 'NAVIGATION'
refcon_protocol['entityType'] = 'NAVIGATION'
protocol_dict['REFCON'] = json_encoded_value(refcon_protocol)
protocol_dict['CATEGORY'] = None
children = [protocol.getPermId() for protocol in protocols]
protocol_dict['CHILDREN'] = json_encoded_value(children)
protocol_dict['PROPERTIES'] = json_encoded_value([])
protocol_dict['ROOT_LEVEL'] = True
media_dict = {}
media_dict["SUMMARY_HEADER"] = "media"
media_dict["SUMMARY"] = "Medias in YeastLab"
media_dict['PERM_ID'] = "MEDIA"
refcon_media = {}
refcon_media['code'] = "MEDIA"
refcon_media['entityKind'] = 'NAVIGATION'
refcon_media['entityType'] = 'NAVIGATION'
media_dict['REFCON'] = json_encoded_value(refcon_media)
media_dict['CATEGORY'] = None
children = [media.getPermId() for media in medias]
media_dict['CHILDREN'] = json_encoded_value(children)
media_dict['PROPERTIES'] = json_encoded_value([])
media_dict['ROOT_LEVEL'] = True
pcr_dict = {}
pcr_dict["SUMMARY_HEADER"] = "pcr"
pcr_dict["SUMMARY"] = "PCR in YeastLab"
pcr_dict['PERM_ID'] = "PCR"
refcon_pcr = {}
refcon_pcr['code'] = "PCR"
refcon_pcr['entityKind'] = 'NAVIGATION'
refcon_pcr['entityType'] = 'NAVIGATION'
pcr_dict['REFCON'] = json_encoded_value(refcon_pcr)
pcr_dict['CATEGORY'] = None
children = [pcr.getPermId() for pcr in pcrs]
pcr_dict['CHILDREN'] = json_encoded_value(children)
pcr_dict['PROPERTIES'] = json_encoded_value([])
pcr_dict['ROOT_LEVEL'] = True
buffer_dict = {}
buffer_dict["SUMMARY_HEADER"] = "buffer"
buffer_dict["SUMMARY"] = "Solution Buffers in YeastLab"
buffer_dict['PERM_ID'] = "SOLUTIONS_BUFFERS"
refcon_buffer = {}
refcon_buffer['code'] = "SOLUTIONS_BUFFERS"
refcon_buffer['entityKind'] = 'NAVIGATION'
refcon_buffer['entityType'] = 'NAVIGATION'
buffer_dict['REFCON'] = json_encoded_value(refcon_buffer)
buffer_dict['CATEGORY'] = None
children = [buffer.getPermId() for buffer in buffers]
buffer_dict['CHILDREN'] = json_encoded_value(children)
buffer_dict['PROPERTIES'] = json_encoded_value([])
buffer_dict['ROOT_LEVEL'] = True
plasmid_dict = {}
plasmid_dict["SUMMARY_HEADER"] = "plasmid"
plasmid_dict["SUMMARY"] = "Plasmids in YeastLab"
plasmid_dict['PERM_ID'] = "PLASMID"
refcon_plasmid = {}
refcon_plasmid['code'] = "PLASMID"
refcon_plasmid['entityKind'] = 'NAVIGATION'
refcon_plasmid['entityType'] = 'NAVIGATION'
plasmid_dict['REFCON'] = json_encoded_value(refcon_plasmid)
plasmid_dict['CATEGORY'] = None
children = [plasmid.getPermId() for plasmid in plasmids]
plasmid_dict['CHILDREN'] = json_encoded_value(children)
plasmid_dict['PROPERTIES'] = json_encoded_value([])
plasmid_dict['ROOT_LEVEL'] = True
yeast_dict = {}
yeast_dict["SUMMARY_HEADER"] = "yeast"
yeast_dict["SUMMARY"] = "Yeasts in YeastLab"
yeast_dict['PERM_ID'] = "YEAST"
refcon_yeast = {}
refcon_yeast['code'] = "YEAST"
refcon_yeast['entityKind'] = 'NAVIGATION'
refcon_yeast['entityType'] = 'NAVIGATION'
yeast_dict['REFCON'] = json_encoded_value(refcon_yeast)
yeast_dict['CATEGORY'] = None
children = [yeast.getPermId() for yeast in yeasts]
yeast_dict['CHILDREN'] = json_encoded_value(children)
yeast_dict['PROPERTIES'] = json_encoded_value([])
yeast_dict['ROOT_LEVEL'] = True
bacteria_dict = {}
bacteria_dict["SUMMARY_HEADER"] = "bacteria"
bacteria_dict["SUMMARY"] = "Bacteria in YeastLab"
bacteria_dict['PERM_ID'] = "BACTERIA"
refcon_bacteria = {}
refcon_bacteria['code'] = "BACTERIA"
refcon_bacteria['entityKind'] = 'NAVIGATION'
refcon_bacteria['entityType'] = 'NAVIGATION'
bacteria_dict['REFCON'] = json_encoded_value(refcon_bacteria)
bacteria_dict['CATEGORY'] = None
children = [bacteria.getPermId() for bacteria in bacterias]
bacteria_dict['CHILDREN'] = json_encoded_value(children)
bacteria_dict['PROPERTIES'] = json_encoded_value([])
bacteria_dict['ROOT_LEVEL'] = True
enzyme_dict = {}
enzyme_dict["SUMMARY_HEADER"] = "enzyme"
enzyme_dict["SUMMARY"] = "Enzymes in YeastLab"
enzyme_dict['PERM_ID'] = "ENZYME"
refcon_enzyme = {}
refcon_enzyme['code'] = "ENZYME"
refcon_enzyme['entityKind'] = 'NAVIGATION'
refcon_enzyme['entityType'] = 'NAVIGATION'
enzyme_dict['REFCON'] = json_encoded_value(refcon_enzyme)
enzyme_dict['CATEGORY'] = None
children = [enzyme.getPermId() for enzyme in enzymes]
enzyme_dict['CHILDREN'] = json_encoded_value(children)
enzyme_dict['PROPERTIES'] = json_encoded_value([])
enzyme_dict['ROOT_LEVEL'] = True
westernBlotting_dict = {}
westernBlotting_dict["SUMMARY_HEADER"] = "western blotting"
westernBlotting_dict["SUMMARY"] = "Western Blotting in YeastLab"
westernBlotting_dict['PERM_ID'] = "WESTERN_BLOTTING"
refcon_westernBlotting = {}
refcon_westernBlotting['code'] = "WESTERN_BLOTTING"
refcon_westernBlotting['entityKind'] = 'NAVIGATION'
refcon_westernBlotting['entityType'] = 'NAVIGATION'
westernBlotting_dict['REFCON'] = json_encoded_value(refcon_westernBlotting)
westernBlotting_dict['CATEGORY'] = None
children = [westernBlotting.getPermId() for westernBlotting in westernBlottings]
westernBlotting_dict['CHILDREN'] = json_encoded_value(children)
westernBlotting_dict['PROPERTIES'] = json_encoded_value([])
westernBlotting_dict['ROOT_LEVEL'] = True
def navigation_layer(oligos, antibodies, chemicals, protocols, medias, pcrs, buffers, plasmids, yeasts, bacterias, enzymes, westernBlottings):
oligo_dict = navigation_layer_simple("oligo", "Oligos in YeastLab", "OLIGO", oligos)
antibody_dict = navigation_layer_simple("antibody", "Antibodies in YeastLab", "ANTIBODY", antibodies)
chemical_dict = navigation_layer_simple("chemical", "Chemicals in YeastLab", "CHEMICAL", chemicals)
protocol_dict = navigation_layer_simple("protocol", "Protocols in YeastLab", "GENERAL_PROTOCOL", protocols)
media_dict = navigation_layer_simple("media", "Medias in YeastLab", "MEDIA", medias)
pcr_dict = navigation_layer_simple("pcr", "PCR in YeastLab", "PCR", pcrs)
buffer_dict = navigation_layer_simple("buffer", "Solution Buffers in YeastLab", "SOLUTIONS_BUFFERS", buffers)
plasmid_dict = navigation_layer_simple("plasmid", "Plasmids in YeastLab", "PLASMID", plasmids)
yeast_dict = navigation_layer_simple("yeast", "Yeasts in YeastLab", "YEAST", yeasts)
bacteria_dict = navigation_layer_simple("bacteria", "Bacteria in YeastLab", "BACTERIA", bacterias)
enzyme_dict = navigation_layer_simple("enzyme", "Enzymes in YeastLab", "ENZYME", enzymes)
westernBlotting_dict = navigation_layer_simple("western blotting", "Western Blotting in YeastLab", "WESTERN_BLOTTING", westernBlottings)
return [oligo_dict, antibody_dict, chemical_dict, protocol_dict, media_dict, pcr_dict, buffer_dict, plasmid_dict, yeast_dict, bacteria_dict, enzyme_dict, westernBlotting_dict] return [oligo_dict, antibody_dict, chemical_dict, protocol_dict, media_dict, pcr_dict, buffer_dict, plasmid_dict, yeast_dict, bacteria_dict, enzyme_dict, westernBlotting_dict]
def sample_to_dict_with_props(sample, want_props): def sample_to_dict_with_props(sample, want_props):
......
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