Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
O
openbis
Manage
Activity
Members
Labels
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Model registry
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
sispub
openbis
Commits
ed8dcb72
Commit
ed8dcb72
authored
13 years ago
by
tpylak
Browse files
Options
Downloads
Patches
Plain Diff
minor: do not detect reader for each file
SVN: 21110
parent
30e820df
Loading
Loading
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ColorRangeCalculator.java
+30
-25
30 additions, 25 deletions
...nbis/dss/generic/server/plugins/ColorRangeCalculator.java
with
30 additions
and
25 deletions
screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/ColorRangeCalculator.java
+
30
−
25
View file @
ed8dcb72
...
...
@@ -129,33 +129,39 @@ public class ColorRangeCalculator
{
Collection
<
ImagePixelsRange
>
ranges
=
new
ArrayList
<
ColorRangeCalculator
.
ImagePixelsRange
>();
IImageReader
reader
=
tryFindReader
(
imageFiles
.
get
(
0
));
if
(
reader
==
null
)
{
throw
new
IOException
(
"Cannot find a proper reader for the images"
);
}
for
(
File
imageFile
:
imageFiles
)
{
BufferedImage
image
=
loadImage
(
imageFile
);
BufferedImage
image
=
loadImage
(
reader
,
imageFile
);
ImagePixelsRange
range
=
calculatePixelsRange
(
image
,
0
,
Integer
.
MAX_VALUE
);
ranges
.
add
(
range
);
}
return
calculateOverlapRange
(
ranges
);
}
private
static
BufferedImage
tryRead
(
String
libraryName
,
File
file
)
private
static
BufferedImage
loadImage
(
IImageReader
reader
,
File
file
)
throws
IOException
{
IImageReader
reader
=
ImageReaderFactory
.
tryGetImageReaderForFile
(
libraryName
,
file
.
getPath
());
TiffReadParams
params
=
new
TiffReadParams
();
params
.
setAllow16BitGrayscaleModel
(
true
);
if
(
reader
!=
null
)
{
// System.err.println("Used reader: " + reader.getName());
return
reader
.
readImage
(
file
,
params
);
}
else
if
(
file
.
isFile
()
==
false
)
{
return
null
;
throw
new
IOException
(
"File does not exist: "
+
file
.
getPath
())
;
}
TiffReadParams
params
=
new
TiffReadParams
();
params
.
setAllow16BitGrayscaleModel
(
true
);
return
reader
.
readImage
(
file
,
params
);
}
private
static
BufferedImage
loadImage
(
File
file
)
throws
IOException
private
static
IImageReader
tryFindReader
(
File
file
)
throws
IOException
{
if
(
file
.
isFile
()
==
false
)
{
throw
new
IOException
(
"File does not exist: "
+
file
.
getPath
());
}
String
[]
libraries
=
new
String
[]
{
ImageReaderConstants
.
JAI_LIBRARY
,
ImageReaderConstants
.
IMAGEIO_LIBRARY
,
...
...
@@ -163,16 +169,19 @@ public class ColorRangeCalculator
ImageReaderConstants
.
BIOFORMATS_LIBRARY
};
for
(
String
libraryName
:
libraries
)
{
BufferedImage
image
=
tryRead
(
libraryName
,
file
);
if
(
image
!=
null
)
IImageReader
reader
=
ImageReaderFactory
.
tryGetImageReaderForFile
(
libraryName
,
file
.
getPath
());
if
(
reader
!=
null
)
{
// System.err.println("Used library: " + libraryName);
return
image
;
// System.err
// .println("Used library: " + libraryName + ", reader: " + reader.getName());
return
reader
;
}
}
throw
new
IOException
(
"Cannot read image "
+
file
.
getPath
())
;
return
null
;
}
/** Can be useful to rescale colors of the whole well or plate. */
public
static
void
main
(
String
[]
args
)
throws
IOException
{
if
(
args
.
length
==
0
)
...
...
@@ -183,15 +192,11 @@ public class ColorRangeCalculator
List
<
File
>
imageFiles
=
new
ArrayList
<
File
>();
for
(
int
i
=
0
;
i
<
args
.
length
;
i
++)
{
File
imageFile
=
new
File
(
args
[
i
]);
if
(
imageFile
.
isFile
()
==
false
)
{
System
.
err
.
println
(
"File does not exist: "
+
imageFile
.
getPath
());
System
.
exit
(
1
);
}
imageFiles
.
add
(
imageFile
);
imageFiles
.
add
(
new
File
(
args
[
i
]));
}
ImagePixelsRange
range
=
calculatePixelsRange
(
imageFiles
);
System
.
out
.
println
(
range
.
getMin
()
+
" "
+
range
.
getMax
());
}
}
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment