Merge branch 'sekhar'

src/python/OBis/obis/__init__.py

+__author__ = 'Chandrasekhar Ramakrishnan <chandrasekhar.ramakrishnan@id.ethz.ch>'
+__version__ = '0.1.0'
+

src/python/OBis/obis/scripts/__init__.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""
+__init__.py
+
+The package containing scripts for working with obis, including the command-line interface.
+
+
+Created by Chandrasekhar Ramakrishnan on 2017-01-27.
+Copyright (c) 2017 Chandrasekhar Ramakrishnan. All rights reserved.
+"""
+

src/python/OBis/obis/scripts/cli.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""
+cli.py
+
+The module that implements the CLI for obis.
+
+
+Created by Chandrasekhar Ramakrishnan on 2017-01-27.
+Copyright (c) 2017 Chandrasekhar Ramakrishnan. All rights reserved.
+"""
+
+import os
+from datetime import datetime
+
+import click
+
+
+def click_echo(message):
+    timestamp = datetime.now().strftime("%H:%M:%S")
+    click.echo("{} {}".format(timestamp, message))
+
+
+def click_progress(progress_data):
+    if progress_data['type'] == 'progress':
+        click_echo(progress_data['message'])
+
+
+def click_progress_no_ts(progress_data):
+    if progress_data['type'] == 'progress':
+        click.echo("{}".format(progress_data['message']))
+
+
+@click.group()
+@click.option('-q', '--quiet', default=False, is_flag=True, help='Suppress status reporting.')
+@click.pass_context
+def cli(ctx, quiet):
+    ctx.obj['quiet'] = quiet
+
+
+@cli.group()
+@click.pass_context
+def init(ctx, folder):
+    """Group for the various init subcommands"""
+    pass
+
+
+@init.command()
+@click.pass_context
+@click.argument('folder', type=click.Path(exists=True))
+def data(ctx, folder):
+    """Initialize the folder as a data folder."""
+    click_echo("init data {}".format(folder))
+
+
+@init.command()
+@click.pass_context
+@click.argument('folder', type=click.Path(exists=True))
+def analysis(ctx, folder):
+    """Initialize the folder as an analysis folder."""
+    click_echo("init analysis {}".format(folder))
+
+
+@cli.command()
+@click.pass_context
+def commit(ctx):
+    """Commit the repository to openBIS.
+    """
+    click_echo("commit")
+
+
+@cli.command()
+@click.pass_context
+@click.argument('other', type=click.Path(exists=True))
+def addref(ctx, other):
+    """Add a reference to the other repository in this repository.
+    """
+    click_echo("addref {}".format(other))
+
+
+@cli.command()
+@click.pass_context
+@click.argument('url')
+def clone(ctx, url):
+    """Clone the repository found at url.
+    """
+    click_echo("clone {}".format(url))
+
+
+@cli.command()
+@click.pass_context
+@click.argument('file')
+def get(ctx, f):
+    """Get one or more files from a clone of this repository.
+    """
+    click_echo("get {}".format(f))
+
+
+def main():
+    cli(obj={})
+
+
+if __name__ == '__main__':
+    main()

src/python/OBis/setup.py

+import os
+
+from setuptools import setup
+
+setup(name='obis',
+      version='0.1.0',
+      description='Local data management with assistance from OpenBIS.',
+      url='https://sissource.ethz.ch/sis/pybis/',
+      author='SIS | ID | ETH Zuerich',
+      author_email='chandrasekhar.ramakrishnan@id.ethz.ch',
+      license='BSD',
+      packages=['obis'],
+      install_requires=[
+          'pytest',
+          'pybis',
+          'click'
+      ],
+      entry_points='''
+        [console_scripts]
+        obis=obis.scripts.cli:main
+      ''',
+      zip_safe=True)