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Commit d622b6e7 authored by Henry Luetcke's avatar Henry Luetcke Committed by Adam Laskowski
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update HTML doc with m2html

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...@@ -320,7 +320,7 @@ classdef OpenBis ...@@ -320,7 +320,7 @@ classdef OpenBis
% code ... new experiment code % code ... new experiment code
% project ... project for new experiment ('/SPACE/Project') % project ... project for new experiment ('/SPACE/Project')
% Usage: % Usage:
% exp = obi.new_experiment('type', 'EXP1234', '/SPACE/Project') % exp = obi.new_experiment('DEFAULT_EXPERIMENT', 'EXP1234', '/SPACE/Project')
% determine type object % determine type object
t = obj.pybis.get_experiment_type(type); t = obj.pybis.get_experiment_type(type);
......
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<!DOCTYPE html
PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html><head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<!--
This HTML was auto-generated from MATLAB code.
To make changes, update the MATLAB code and republish this document.
--><title>df_to_table</title><meta name="generator" content="MATLAB 9.4"><link rel="schema.DC" href="http://purl.org/dc/elements/1.1/"><meta name="DC.date" content="2019-03-21"><meta name="DC.source" content="df_to_table.m"><style type="text/css">
html,body,div,span,applet,object,iframe,h1,h2,h3,h4,h5,h6,p,blockquote,pre,a,abbr,acronym,address,big,cite,code,del,dfn,em,font,img,ins,kbd,q,s,samp,small,strike,strong,sub,sup,tt,var,b,u,i,center,dl,dt,dd,ol,ul,li,fieldset,form,label,legend,table,caption,tbody,tfoot,thead,tr,th,td{margin:0;padding:0;border:0;outline:0;font-size:100%;vertical-align:baseline;background:transparent}body{line-height:1}ol,ul{list-style:none}blockquote,q{quotes:none}blockquote:before,blockquote:after,q:before,q:after{content:'';content:none}:focus{outine:0}ins{text-decoration:none}del{text-decoration:line-through}table{border-collapse:collapse;border-spacing:0}
html { min-height:100%; margin-bottom:1px; }
html body { height:100%; margin:0px; font-family:Arial, Helvetica, sans-serif; font-size:10px; color:#000; line-height:140%; background:#fff none; overflow-y:scroll; }
html body td { vertical-align:top; text-align:left; }
h1 { padding:0px; margin:0px 0px 25px; font-family:Arial, Helvetica, sans-serif; font-size:1.5em; color:#d55000; line-height:100%; font-weight:normal; }
h2 { padding:0px; margin:0px 0px 8px; font-family:Arial, Helvetica, sans-serif; font-size:1.2em; color:#000; font-weight:bold; line-height:140%; border-bottom:1px solid #d6d4d4; display:block; }
h3 { padding:0px; margin:0px 0px 5px; font-family:Arial, Helvetica, sans-serif; font-size:1.1em; color:#000; font-weight:bold; line-height:140%; }
a { color:#005fce; text-decoration:none; }
a:hover { color:#005fce; text-decoration:underline; }
a:visited { color:#004aa0; text-decoration:none; }
p { padding:0px; margin:0px 0px 20px; }
img { padding:0px; margin:0px 0px 20px; border:none; }
p img, pre img, tt img, li img, h1 img, h2 img { margin-bottom:0px; }
ul { padding:0px; margin:0px 0px 20px 23px; list-style:square; }
ul li { padding:0px; margin:0px 0px 7px 0px; }
ul li ul { padding:5px 0px 0px; margin:0px 0px 7px 23px; }
ul li ol li { list-style:decimal; }
ol { padding:0px; margin:0px 0px 20px 0px; list-style:decimal; }
ol li { padding:0px; margin:0px 0px 7px 23px; list-style-type:decimal; }
ol li ol { padding:5px 0px 0px; margin:0px 0px 7px 0px; }
ol li ol li { list-style-type:lower-alpha; }
ol li ul { padding-top:7px; }
ol li ul li { list-style:square; }
.content { font-size:1.2em; line-height:140%; padding: 20px; }
pre, code { font-size:12px; }
tt { font-size: 1.2em; }
pre { margin:0px 0px 20px; }
pre.codeinput { padding:10px; border:1px solid #d3d3d3; background:#f7f7f7; }
pre.codeoutput { padding:10px 11px; margin:0px 0px 20px; color:#4c4c4c; }
pre.error { color:red; }
@media print { pre.codeinput, pre.codeoutput { word-wrap:break-word; width:100%; } }
span.keyword { color:#0000FF }
span.comment { color:#228B22 }
span.string { color:#A020F0 }
span.untermstring { color:#B20000 }
span.syscmd { color:#B28C00 }
.footer { width:auto; padding:10px 0px; margin:25px 0px 0px; border-top:1px dotted #878787; font-size:0.8em; line-height:140%; font-style:italic; color:#878787; text-align:left; float:none; }
.footer p { margin:0px; }
.footer a { color:#878787; }
.footer a:hover { color:#878787; text-decoration:underline; }
.footer a:visited { color:#878787; }
table th { padding:7px 5px; text-align:left; vertical-align:middle; border: 1px solid #d6d4d4; font-weight:bold; }
table td { padding:7px 5px; text-align:left; vertical-align:top; border:1px solid #d6d4d4; }
</style></head><body><div class="content"><pre class="codeinput"><span class="keyword">function</span> [matlab_table] = df_to_table(df)
<span class="comment">%df_to_table</span>
<span class="comment">% Returns a Matlab table for a Python dataframe</span>
csv_temp = sprintf(<span class="string">'%s.csv'</span>, tempname);
df.to_csv(csv_temp);
matlab_table = readtable(csv_temp);
delete(csv_temp);
<span class="keyword">end</span>
</pre><p class="footer"><br><a href="https://www.mathworks.com/products/matlab/">Published with MATLAB&reg; R2018a</a><br></p></div><!--
##### SOURCE BEGIN #####
function [matlab_table] = df_to_table(df)
%df_to_table
% Returns a Matlab table for a Python dataframe
csv_temp = sprintf('%s.csv', tempname);
df.to_csv(csv_temp);
matlab_table = readtable(csv_temp);
delete(csv_temp);
end
##### SOURCE END #####
--></body></html>
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<?php
/******************************************************************************
*
* $Id:$
*
* Copyright (C) 1997-2003 by Dimitri van Heesch.
*
* Permission to use, copy, modify, and distribute this software and its
* documentation under the terms of the GNU General Public License is hereby
* granted. No representations are made about the suitability of this software
* for any purpose. It is provided "as is" without express or implied warranty.
* See the GNU General Public License for more details.
*
*/
function readInt($file)
{
$b1 = ord(fgetc($file)); $b2 = ord(fgetc($file));
$b3 = ord(fgetc($file)); $b4 = ord(fgetc($file));
return ($b1<<24)|($b2<<16)|($b3<<8)|$b4;
}
function readString($file)
{
$result="";
while (ord($c=fgetc($file))) $result.=$c;
return $result;
}
function readHeader($file)
{
$header =fgetc($file); $header.=fgetc($file);
$header.=fgetc($file); $header.=fgetc($file);
return $header;
}
function computeIndex($word)
{
if (strlen($word)<2) return -1;
// high char of the index
$hi = ord($word{0});
if ($hi==0) return -1;
// low char of the index
$lo = ord($word{1});
if ($lo==0) return -1;
// return index
return $hi*256+$lo;
}
function search($file,$word,&$statsList)
{
$index = computeIndex($word);
if ($index!=-1) // found a valid index
{
fseek($file,$index*4+4); // 4 bytes per entry, skip header
$index = readInt($file);
if ($index) // found words matching first two characters
{
$start=sizeof($statsList);
$count=$start;
fseek($file,$index);
$w = readString($file);
while ($w)
{
$statIdx = readInt($file);
if ($word==substr($w,0,strlen($word)))
{ // found word that matches (as substring)
$statsList[$count++]=array(
"word"=>$word,
"match"=>$w,
"index"=>$statIdx,
"full"=>strlen($w)==strlen($word),
"docs"=>array()
);
}
$w = readString($file);
}
$totalFreq=0;
for ($count=$start;$count<sizeof($statsList);$count++)
{
$statInfo = &$statsList[$count];
fseek($file,$statInfo["index"]);
$numDocs = readInt($file);
$docInfo = array();
// read docs info + occurrence frequency of the word
for ($i=0;$i<$numDocs;$i++)
{
$idx=readInt($file);
$freq=readInt($file);
$docInfo[$i]=array("idx"=>$idx,"freq"=>$freq,"rank"=>0.0);
$totalFreq+=$freq;
if ($statInfo["full"]) $totalfreq+=$freq;
}
// read name an url info for the doc
for ($i=0;$i<$numDocs;$i++)
{
fseek($file,$docInfo[$i]["idx"]);
$docInfo[$i]["name"]=readString($file);
$docInfo[$i]["url"]=readString($file);
}
$statInfo["docs"]=$docInfo;
}
for ($count=$start;$count<sizeof($statsList);$count++)
{
$statInfo = &$statsList[$count];
for ($i=0;$i<sizeof($statInfo["docs"]);$i++)
{
$docInfo = &$statInfo["docs"];
// compute frequency rank of the word in each doc
$statInfo["docs"][$i]["rank"]=
(float)$docInfo[$i]["freq"]/$totalFreq;
}
}
}
}
return $statsList;
}
function combine_results($results,&$docs)
{
foreach ($results as $wordInfo)
{
$docsList = &$wordInfo["docs"];
foreach ($docsList as $di)
{
$key=$di["url"];
$rank=$di["rank"];
if (in_array($key, array_keys($docs)))
{
$docs[$key]["rank"]+=$rank;
$docs[$key]["rank"]*=2; // multiple matches increases rank
}
else
{
$docs[$key] = array("url"=>$key,
"name"=>$di["name"],
"rank"=>$rank
);
}
$docs[$key]["words"][] = array(
"word"=>$wordInfo["word"],
"match"=>$wordInfo["match"],
"freq"=>$di["freq"]
);
}
}
return $docs;
}
function normalize_ranking(&$docs)
{
$maxRank = 0.0000001;
// compute maximal rank
foreach ($docs as $doc)
{
if ($doc["rank"]>$maxRank)
{
$maxRank=$doc["rank"];
}
}
reset($docs);
// normalize rankings
while (list ($key, $val) = each ($docs))
{
$docs[$key]["rank"]*=100/$maxRank;
}
}
function filter_results($docs,&$requiredWords,&$forbiddenWords)
{
$filteredDocs=array();
while (list ($key, $val) = each ($docs))
{
$words = &$docs[$key]["words"];
$copy=1; // copy entry by default
if (sizeof($requiredWords)>0)
{
foreach ($requiredWords as $reqWord)
{
$found=0;
foreach ($words as $wordInfo)
{
$found = $wordInfo["word"]==$reqWord;
if ($found) break;
}
if (!$found)
{
$copy=0; // document contains none of the required words
break;
}
}
}
if (sizeof($forbiddenWords)>0)
{
foreach ($words as $wordInfo)
{
if (in_array($wordInfo["word"],$forbiddenWords))
{
$copy=0; // document contains a forbidden word
break;
}
}
}
if ($copy) $filteredDocs[$key]=$docs[$key];
}
return $filteredDocs;
}
function compare_rank($a,$b)
{
return ($a["rank"]>$b["rank"]) ? -1 : 1;
}
function sort_results($docs,&$sorted)
{
$sorted = $docs;
usort($sorted,"compare_rank");
return $sorted;
}
function report_results(&$docs)
{
echo "<table cellspacing=\"2\">\n";
echo " <tr>\n";
echo " <td colspan=\"2\"><h2>Search Results</h2></td>\n";
echo " </tr>\n";
$numDocs = sizeof($docs);
if ($numDocs==0)
{
echo " <tr>\n";
echo " <td colspan=\"2\">".matches_text(0)."</td>\n";
echo " </tr>\n";
}
else
{
echo " <tr>\n";
echo " <td colspan=\"2\">".matches_text($numDocs);
echo "\n";
echo " </td>\n";
echo " </tr>\n";
$num=1;
foreach ($docs as $doc)
{
echo " <tr>\n";
echo " <td align=\"right\">$num.</td>";
echo "<td><a class=\"el\" href=\"".$doc["url"]."\">".$doc["name"]."</a></td>\n";
echo " <tr>\n";
echo " <td></td><td class=\"tiny\">Matches: ";
foreach ($doc["words"] as $wordInfo)
{
$word = $wordInfo["word"];
$matchRight = substr($wordInfo["match"],strlen($word));
echo "<b>$word</b>$matchRight(".$wordInfo["freq"].") ";
}
echo " </td>\n";
echo " </tr>\n";
$num++;
}
}
echo "</table>\n";
}
function matches_text($num)
{
if ($num==0)
{
return 'Sorry, no documents matching your query.';
}
else if ($num==1)
{
return 'Found 1 document matching your query.';
}
else // $num>1
{
return 'Found '.$num.' documents matching your query. Showing best matches first.';
}
}
function main($idxfile)
{
if(strcmp('4.1.0', phpversion()) > 0)
{
die("Error: PHP version 4.1.0 or above required!");
}
if (!($file=fopen($idxfile,"rb")))
{
die("Error: Search index file could NOT be opened!");
}
if (readHeader($file)!="DOXS")
{
die("Error: Header of index file is invalid!");
}
$query="";
if (array_key_exists("query", $_GET))
{
$query=$_GET["query"];
}
$results = array();
$requiredWords = array();
$forbiddenWords = array();
$foundWords = array();
$word=strtolower(strtok($query," "));
while ($word) // for each word in the search query
{
if (($word{0}=='+')) { $word=substr($word,1); $requiredWords[]=$word; }
if (($word{0}=='-')) { $word=substr($word,1); $forbiddenWords[]=$word; }
if (!in_array($word,$foundWords))
{
$foundWords[]=$word;
search($file,$word,$results);
}
$word=strtolower(strtok(" "));
}
$docs = array();
combine_results($results,$docs);
// filter out documents with forbidden word or that do not contain
// required words
$filteredDocs = filter_results($docs,$requiredWords,$forbiddenWords);
// normalize rankings so they are in the range [0-100]
normalize_ranking($filteredDocs);
// sort the results based on rank
$sorted = array();
sort_results($filteredDocs,$sorted);
// report results to the user
report_results($sorted);
fclose($file);
}
?>
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/REC-html40/loose.dtd">
<html>
<head>
<title>Matlab Index</title>
<meta name="keywords" content="matlab-openbis">
<meta name="description" content="matlab-openbis">
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="generator" content="m2html v1.5 &copy; 2003-2005 Guillaume Flandin">
<meta name="robots" content="index, follow">
<link type="text/css" rel="stylesheet" href="./m2html.css">
</head>
<body>
<a name="_top"></a>
<h1>Matlab Index</h1>
<h2>Matlab Directories</h2>
<ul style="list-style-image:url(./matlabicon.gif)">
<li><a href="matlab-openbis/index.html">matlab-openbis</a></li></ul>
<h2>Matlab Files found in these Directories</h2>
<table width="100%">
<tr>
<td><a href="matlab-openbis/OpenBis.html" title="matlab-openbis">OpenBis</a></td> <td><a href="matlab-openbis/obi_test.html" title="matlab-openbis">obi_test</a></td> <td><a href="matlab-openbis/passwordEntryDialog.html" title="matlab-openbis">passwordEntryDialog</a></td> <td><a href="matlab-openbis/user_url_pw_inputdlg.html" title="matlab-openbis">user_url_pw_inputdlg</a></td> </tr> <tr>
<td><a href="matlab-openbis/df_to_table.html" title="matlab-openbis">df_to_table</a></td> <td><a href="matlab-openbis/passcode.html" title="matlab-openbis">passcode</a></td> <td><a href="matlab-openbis/user_url_pw_input_dialog.html" title="matlab-openbis">user_url_pw_input_dialog</a></td> <td><a href="" title=""></a></td> </tr></table>
<hr><address>Generated on Tue 06-Jul-2021 16:01:17 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
</body>
</html>
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body {
background: white;
color: black;
font-family: arial,sans-serif;
margin: 0;
padding: 1ex;
}
div.fragment {
width: 98%;
border: 1px solid #CCCCCC;
background-color: #f5f5f5;
padding-left: 4px;
margin: 4px;
}
div.box {
width: 98%;
background-color: #f5f5f5;
border: 1px solid #CCCCCC;
color: black;
padding: 4px;
}
.comment {
color: #228B22;
}
.string {
color: #B20000;
}
.keyword {
color: #0000FF;
}
.keywordtype { color: #604020; }
.keywordflow { color: #e08000; }
.preprocessor { color: #806020; }
.stringliteral { color: #002080; }
.charliteral { color: #008080; }
a {
text-decoration: none;
}
a:hover {
background-color: #006699;
color:#FFFFFF;
}
a.code {
font-weight: normal;
color: #A020F0;
}
a.code:hover {
background-color: #FF0000;
color: #FFFFFF;
}
h1 {
background: transparent;
color: #006699;
font-size: x-large;
text-align: center;
}
h2 {
background: transparent;
color: #006699;
font-size: large;
}
address {
font-size:small;
}
form.search {
margin-bottom: 0px;
margin-top: 0px;
}
input.search {
font-size: 75%;
color: #000080;
font-weight: normal;
background-color: #eeeeff;
}
li {
padding-left:5px;
}
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/REC-html40/loose.dtd">
<html>
<head>
<title>Description of df_to_table</title>
<meta name="keywords" content="df_to_table">
<meta name="description" content="df_to_table">
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="generator" content="m2html v1.5 &copy; 2003-2005 Guillaume Flandin">
<meta name="robots" content="index, follow">
<link type="text/css" rel="stylesheet" href="../m2html.css">
</head>
<body>
<a name="_top"></a>
<div><a href="../index.html">Home</a> &gt; <a href="index.html">matlab-openbis</a> &gt; df_to_table.m</div>
<!--<table width="100%"><tr><td align="left"><a href="../index.html"><img alt="<" border="0" src="../left.png">&nbsp;Master index</a></td>
<td align="right"><a href="index.html">Index for matlab-openbis&nbsp;<img alt=">" border="0" src="../right.png"></a></td></tr></table>-->
<h1>df_to_table
</h1>
<h2><a name="_name"></a>PURPOSE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>df_to_table</strong></div>
<h2><a name="_synopsis"></a>SYNOPSIS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>function [matlab_table] = df_to_table(df) </strong></div>
<h2><a name="_description"></a>DESCRIPTION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre class="comment">df_to_table
Returns a Matlab table for a Python dataframe</pre></div>
<!-- crossreference -->
<h2><a name="_cross"></a>CROSS-REFERENCE INFORMATION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
This function calls:
<ul style="list-style-image:url(../matlabicon.gif)">
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="OpenBis.html" class="code" title="">OpenBis</a> </li></ul>
<!-- crossreference -->
<h2><a name="_source"></a>SOURCE CODE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre>0001 <a name="_sub0" href="#_subfunctions" class="code">function [matlab_table] = df_to_table(df)</a>
0002 <span class="comment">%df_to_table</span>
0003 <span class="comment">% Returns a Matlab table for a Python dataframe</span>
0004
0005 csv_temp = sprintf(<span class="string">'%s.csv'</span>, tempname);
0006 df.to_csv(csv_temp);
0007 matlab_table = readtable(csv_temp);
0008 delete(csv_temp);
0009
0010 <span class="keyword">end</span></pre></div>
<hr><address>Generated on Tue 06-Jul-2021 16:01:18 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
</body>
</html>
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/REC-html40/loose.dtd">
<html>
<head>
<title>Index for Directory matlab-openbis</title>
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<h1>Index for matlab-openbis</h1>
<h2>Matlab files in this directory:</h2>
<table>
<tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="OpenBis.html">OpenBis</a></td><td> </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="df_to_table.html">df_to_table</a></td><td>df_to_table </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="obi_test.html">obi_test</a></td><td>obi_test Testing function for the Matlab openBIS Toolbox </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="passcode.html">passcode</a></td><td>PASSCODE password input dialog box. </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="passwordEntryDialog.html">passwordEntryDialog</a></td><td>PASSWORDENTRYDIALOG </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="user_url_pw_input_dialog.html">user_url_pw_input_dialog</a></td><td>user_url_pw_input </td></tr><tr><td><img src="../matlabicon.gif" alt="" border="">&nbsp;<a href="user_url_pw_inputdlg.html">user_url_pw_inputdlg</a></td><td>user_url_pw_inputdlg </td></tr></table>
<h2>Subsequent directories:</h2>
<ul style="list-style-image:url(../matlabicon.gif)">
<li>.git</li><li>.ipynb_checkpoints</li><li>data</li><li>html</li></ul>
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<h1>obi_test
</h1>
<h2><a name="_name"></a>PURPOSE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>obi_test Testing function for the Matlab openBIS Toolbox</strong></div>
<h2><a name="_synopsis"></a>SYNOPSIS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>function pass = obi_test(varargin) </strong></div>
<h2><a name="_description"></a>DESCRIPTION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre class="comment">obi_test Testing function for the Matlab openBIS Toolbox
This function runs a few tests for the Matlab openBIS Toolbox. It
returns true if all the tests pass successfully and fasle otherwise.
Input argumtents (all optional):
teardown ... delete everything at the end (true)</pre></div>
<!-- crossreference -->
<h2><a name="_cross"></a>CROSS-REFERENCE INFORMATION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
This function calls:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="OpenBis.html" class="code" title="">OpenBis</a> </li></ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
</ul>
<!-- crossreference -->
<h2><a name="_source"></a>SOURCE CODE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre>0001 <a name="_sub0" href="#_subfunctions" class="code">function pass = obi_test(varargin)</a>
0002 <span class="comment">%obi_test Testing function for the Matlab openBIS Toolbox</span>
0003 <span class="comment">% This function runs a few tests for the Matlab openBIS Toolbox. It</span>
0004 <span class="comment">% returns true if all the tests pass successfully and fasle otherwise.</span>
0005 <span class="comment">% Input argumtents (all optional):</span>
0006 <span class="comment">% teardown ... delete everything at the end (true)</span>
0007 pass = true;
0008
0009 <span class="keyword">if</span> nargin == 1
0010 teardown = varargin{1};
0011 <span class="keyword">else</span>
0012 teardown = true;
0013 <span class="keyword">end</span>
0014
0015 <span class="comment">%% 0. Check if pyversion is setup correctly</span>
0016
0017 <span class="comment">%% 1. Login to openBIS</span>
0018 obi = <a href="OpenBis.html" class="code" title="">OpenBis</a>();
0019 assert(obi.is_session_active(), <span class="string">'Session not active'</span>);
0020
0021 <span class="comment">%% 2. Create space for test</span>
0022 space_name = <span class="string">'TESTING_SPACE'</span>;
0023 <span class="keyword">try</span>
0024 space = obi.new_space(space_name, <span class="string">'a space for tests of the Matlab openBIS Toolbox'</span>);
0025 <span class="keyword">catch</span>
0026 disp(<span class="string">'Could not create requested space'</span>)
0027 rethrow(lasterror)
0028 <span class="keyword">end</span>
0029 spaces = obi.get_spaces();
0030 assert(any(ismember(spaces.code, space_name)), <span class="string">'Space has not been created'</span>);
0031
0032 <span class="comment">%% 3. Create project for test</span>
0033 project_name = <span class="string">'TESTING_PROJECT'</span>;
0034 <span class="keyword">try</span>
0035 project = obi.new_project(space, project_name, <span class="string">'a project for tests of the Matlab openBIS Toolbox'</span>);
0036 <span class="keyword">catch</span>
0037 disp(<span class="string">'Could not create requested project'</span>)
0038 rethrow(lasterror)
0039 <span class="keyword">end</span>
0040 projects = obi.get_projects(space_name, project_name);
0041 assert(any(ismember(projects.identifier, sprintf(<span class="string">'/%s/%s'</span>, space_name, project_name))), <span class="string">'Project has not been created'</span>);
0042
0043 <span class="comment">%% 4. Create experiment for test</span>
0044 experiment_name = <span class="string">'TESTING_EXPERIMENT'</span>;
0045
0046
0047 <span class="comment">%% 5. Create dataset with dummy files</span>
0048
0049
0050 <span class="comment">%% 6. Download the created dataset</span>
0051
0052
0053 <span class="comment">%% 7. Tear-down (delete everything, optional)</span>
0054 <span class="keyword">if</span> teardown
0055 <span class="comment">% delete project</span>
0056 obi.delete_project(project_name, <span class="string">'created by Matlab-openBIS toolbox test function'</span>)
0057 <span class="comment">% delete space</span>
0058 obi.delete_space(space, <span class="string">'created by Matlab-openBIS toolbox test function'</span>)
0059 <span class="keyword">end</span>
0060
0061 <span class="comment">%% 8. Logout</span>
0062 obi.logout()
0063
0064 <span class="keyword">end</span>
0065</pre></div>
<hr><address>Generated on Tue 06-Jul-2021 16:01:18 by <strong><a href="http://www.artefact.tk/software/matlab/m2html/" title="Matlab Documentation in HTML">m2html</a></strong> &copy; 2005</address>
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<meta name="description" content="PASSCODE password input dialog box.">
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<h1>passcode
</h1>
<h2><a name="_name"></a>PURPOSE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>PASSCODE password input dialog box.</strong></div>
<h2><a name="_synopsis"></a>SYNOPSIS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="box"><strong>function pass = passcode </strong></div>
<h2><a name="_description"></a>DESCRIPTION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre class="comment">PASSCODE password input dialog box.
passcode creates a modal dialog box that returns user password input.
Given characters are substituted with '*'-Signs like in usual password dialogs.
usage:
password = PASSCODE
Adapted from https://www.mathworks.com/matlabcentral/fileexchange/6590-passcode
Version: v1.2 (03-Mar-2008)
Author: Elmar Tarajan [MCommander@gmx.de]</pre></div>
<!-- crossreference -->
<h2><a name="_cross"></a>CROSS-REFERENCE INFORMATION <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
This function calls:
<ul style="list-style-image:url(../matlabicon.gif)">
</ul>
This function is called by:
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="user_url_pw_inputdlg.html" class="code" title="function [url, user, pw] = user_url_pw_inputdlg">user_url_pw_inputdlg</a> user_url_pw_inputdlg</li></ul>
<!-- crossreference -->
<h2><a name="_subfunctions"></a>SUBFUNCTIONS <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<ul style="list-style-image:url(../matlabicon.gif)">
<li><a href="#_sub1" class="code">function keypress_Callback(~,data,~,hpass,~)</a></li></ul>
<h2><a name="_source"></a>SOURCE CODE <a href="#_top"><img alt="^" border="0" src="../up.png"></a></h2>
<div class="fragment"><pre>0001 <a name="_sub0" href="#_subfunctions" class="code">function pass = passcode</a>
0002 <span class="comment">%PASSCODE password input dialog box.</span>
0003 <span class="comment">% passcode creates a modal dialog box that returns user password input.</span>
0004 <span class="comment">% Given characters are substituted with '*'-Signs like in usual password dialogs.</span>
0005 <span class="comment">%</span>
0006 <span class="comment">% usage:</span>
0007 <span class="comment">% password = PASSCODE</span>
0008 <span class="comment">%</span>
0009 <span class="comment">% Adapted from https://www.mathworks.com/matlabcentral/fileexchange/6590-passcode</span>
0010 <span class="comment">% Version: v1.2 (03-Mar-2008)</span>
0011 <span class="comment">% Author: Elmar Tarajan [MCommander@gmx.de]</span>
0012
0013
0014 ScreenSize = get(0,<span class="string">'ScreenSize'</span>);
0015 hfig = figure(<span class="string">'Menubar'</span>,<span class="string">'none'</span>, <span class="keyword">...</span>
0016 <span class="string">'Units'</span>,<span class="string">'Pixels'</span>, <span class="keyword">...</span>
0017 <span class="string">'Resize'</span>,<span class="string">'off'</span>, <span class="keyword">...</span>
0018 <span class="string">'NumberTitle'</span>,<span class="string">'off'</span>, <span class="keyword">...</span>
0019 <span class="string">'Name'</span>,[<span class="string">'Enter openBIS password'</span>], <span class="keyword">...</span>
0020 <span class="string">'Position'</span>,[ (ScreenSize(3:4)-[300 75])/2 300 75], <span class="keyword">...</span>
0021 <span class="string">'Color'</span>,[0.8 0.8 0.8], <span class="keyword">...</span>
0022 <span class="string">'WindowStyle'</span>,<span class="string">'modal'</span>);
0023 hedit = uicontrol(<span class="string">'Parent'</span>,hfig, <span class="keyword">...</span>
0024 <span class="string">'Style'</span>,<span class="string">'Edit'</span>, <span class="keyword">...</span>
0025 <span class="string">'Enable'</span>,<span class="string">'inactive'</span>, <span class="keyword">...</span>
0026 <span class="string">'Units'</span>,<span class="string">'Pixels'</span>,<span class="string">'Position'</span>,[49 28 202 22], <span class="keyword">...</span>
0027 <span class="string">'FontSize'</span>,15, <span class="keyword">...</span>
0028 <span class="string">'String'</span>,[], <span class="keyword">...</span>
0029 <span class="string">'BackGroundColor'</span>,[0.7 0.7 0.7]);
0030 hpass = uicontrol(<span class="string">'Parent'</span>,hfig, <span class="keyword">...</span>
0031 <span class="string">'Style'</span>,<span class="string">'Text'</span>, <span class="keyword">...</span>
0032 <span class="string">'Tag'</span>,<span class="string">'password'</span>, <span class="keyword">...</span>
0033 <span class="string">'Units'</span>,<span class="string">'Pixels'</span>,<span class="string">'Position'</span>,[51 30 198 18], <span class="keyword">...</span>
0034 <span class="string">'FontSize'</span>,15, <span class="keyword">...</span>
0035 <span class="string">'BackGroundColor'</span>,[1 1 1]);
0036 hwarn = uicontrol(<span class="string">'Parent'</span>,hfig, <span class="keyword">...</span>
0037 <span class="string">'Style'</span>,<span class="string">'Text'</span>, <span class="keyword">...</span>
0038 <span class="string">'Tag'</span>,<span class="string">'error'</span>, <span class="keyword">...</span>
0039 <span class="string">'Units'</span>,<span class="string">'Pixels'</span>,<span class="string">'Position'</span>,[50 2 200 20], <span class="keyword">...</span>
0040 <span class="string">'FontSize'</span>,8, <span class="keyword">...</span>
0041 <span class="string">'String'</span>,<span class="string">'character not allowed'</span>,<span class="keyword">...</span>
0042 <span class="string">'Visible'</span>,<span class="string">'off'</span>,<span class="keyword">...</span>
0043 <span class="string">'ForeGroundColor'</span>,[1 0 0], <span class="keyword">...</span>
0044 <span class="string">'BackGroundColor'</span>,[0.8 0.8 0.8]);
0045
0046 set(hfig,<span class="string">'KeyPressFcn'</span>,{@<a href="#_sub1" class="code" title="subfunction keypress_Callback(~,data,~,hpass,~)">keypress_Callback</a>,hedit,hpass,hwarn}, <span class="keyword">...</span>
0047 <span class="string">'CloseRequestFcn'</span>,<span class="string">'uiresume'</span>)
0048
0049 uiwait
0050 pass = get(hpass,<span class="string">'userdata'</span>);
0051 delete(hfig)
0052
0053
0054 <a name="_sub1" href="#_subfunctions" class="code">function keypress_Callback(~,data,~,hpass,~)</a>
0055
0056 pass = get(hpass,<span class="string">'userdata'</span>);
0057
0058 <span class="keyword">switch</span> data.Key
0059 <span class="keyword">case</span> <span class="string">'backspace'</span>
0060 pass = pass(1:end-1);
0061 <span class="keyword">case</span> <span class="string">'return'</span>
0062 uiresume
0063 <span class="keyword">return</span>
0064 <span class="keyword">otherwise</span>
0065 <span class="keyword">try</span>
0066 pass = [pass data.Character];
0067 <span class="keyword">catch</span>
0068 disp(<span class="string">'Some error occured during password entry!'</span>)
0069 <span class="keyword">end</span>
0070 <span class="keyword">end</span>
0071
0072 set(hpass,<span class="string">'userdata'</span>,pass)
0073 set(hpass,<span class="string">'String'</span>,char(<span class="string">'*'</span>*sign(pass)))
0074</pre></div>
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