SSDM-10150: change to bioformats 6.5.1 and microscopy/flow plugins to 20.x

datastore_server/build.gradle

@@ -37,7 +37,7 @@ dependencies {
 			'javax.xml.bind:jaxb-api:2.3.0',
 			'org.glassfish.main.javaee-api:javax.jws:3.1.2.2'
 
-	runtime 'bioformats:bioformats:6.5.0'
+	runtime 'bioformats:bioformats:6.5.1'
 
 	// eln-lims Jython APIs dependencies
 	datastoreExecRuntime files("../openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/eln-lims-api/lib/zip4j_1.3.2.jar"),

image_readers/build.gradle

@@ -7,7 +7,7 @@ dependencies {
     compile project(':common'),
         'imagej:ij:1.43u',
         'sun:jai:1.1.3-CISD',
-        'bioformats:bioformats:6.5.0',
+        'bioformats:bioformats:6.5.1',
         'slf4j:slf4j:1.6.2',
         'slf4j:slf4j-log4j12:1.6.2'
         

openbis_standard_technologies/build.gradle

@@ -85,7 +85,7 @@ dependencies {
 					 project(':screening'),
 					 project(':rtd_phosphonetx'),
 					 project(':plasmid'),
-					 'bioformats:bioformats:6.5.0',
+					 'bioformats:bioformats:6.5.1',
 					 'imagej:ij:1.43u',
 					 'cisd:cisd-openbis-knime-server:13.6.0.r29301',
 					 'apache:xml-apis:1.3.03',
@@ -301,15 +301,15 @@ task zipCorePlugins(type: SymZip) {
   includeEmptyDirs = false
   archiveName 'core-plugins.zip'
   
-  downloadCorePlugin('https://github.com/aarpon/obit_flow_core_technology/archive/release/19.x.zip', 'flow')
-  downloadCorePlugin('https://github.com/aarpon/obit_microscopy_core_technology/archive/release/19.x.zip', 'microscopy')
-  downloadCorePlugin('https://github.com/aarpon/obit_shared_core_technology/archive/release/19.x.zip', 'shared')
+  downloadCorePlugin('https://github.com/aarpon/obit_flow_core_technology/archive/release/20.x.zip', 'flow')
+  downloadCorePlugin('https://github.com/aarpon/obit_microscopy_core_technology/archive/release/20.x.zip', 'microscopy')
+  downloadCorePlugin('https://github.com/aarpon/obit_shared_core_technology/archive/release/20.x.zip', 'shared')
   from project(':rtd_phosphonetx').fileTree(dir: 'source/core-plugins', includes:['proteomics/**', 'proteomics-optional/**'], excludes:['**/dss/**', '**/package-to-dist'])
   from project(':screening').fileTree(dir: 'source/core-plugins', includes:['screening/**', 'screening-optional/**'], excludes:['**/dss/**', '**/package-to-dist'])
   from project(':deep_sequencing_unit').fileTree(dir: 'source/core-plugins', includes:['illumina-ngs/**'], excludes:['**/dss/**', '**/package-to-dist'])
-  from fileTree(dir: 'targets/downloads/obit_flow_core_technology-release-19.x/core-plugins', includes:['flow/**'])
-  from fileTree(dir: 'targets/downloads/obit_microscopy_core_technology-release-19.x/core-plugins', includes:['microscopy/**'])
-  from fileTree(dir: 'targets/downloads/obit_shared_core_technology-release-19.x/core-plugins', includes:['shared/**'])
+  from fileTree(dir: 'targets/downloads/obit_flow_core_technology-release-20.x/core-plugins', includes:['flow/**'])
+  from fileTree(dir: 'targets/downloads/obit_microscopy_core_technology-release-20.x/core-plugins', includes:['microscopy/**'])
+  from fileTree(dir: 'targets/downloads/obit_shared_core_technology-release-20.x/core-plugins', includes:['shared/**'])
   from 'dist/core-plugins'
   from 'dist/server/core-plugins.properties'
   into 'core-plugins'

screening/build.gradle

@@ -17,7 +17,7 @@ dependencies {
             'openhms:jackcess:1.2.2',
             'reveregroup:gwt-image-loader:1.1.4',
             'imagej:ij:1.43u',
-            'bioformats:bioformats:6.5.0'
+            'bioformats:bioformats:6.5.1'
 
     devRuntime project(path: ':openbis', configuration: 'devRuntime')
     testCompile project(path: ':datastore_server', configuration: 'tests')