SE-341 Initial Checkin of BaSynthec

SVN: 21569

eu_basynthec/targets/playground/etc/log.xml

-<?xml version="1.0" encoding="UTF-8" ?>
-<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd">
-
-<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'>
-
-  <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender">
-     <layout class="org.apache.log4j.PatternLayout">
-       <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/>
-     </layout>
-  </appender>
-
-  <appender name="NULL" class="org.apache.log4j.varia.NullAppender" />
-
-  <root>
-     <priority value ="info" />
-     <appender-ref ref="STDOUT" />
-  </root>
-
-</log4j:configuration>

eu_basynthec/targets/playground/etc/service.properties

-# Unique code of this Data Store Server. Not more than 40 characters.
-data-store-server-code = DSS1
-
-data-folder = data
-
-# The root directory of the data store
-storeroot-dir = data/store
-
-# The directory where the command queue file is located; defaults to storeroot-dir 
-commandqueue-dir =
-
-# Port
-port = 8889
-
-# Session timeout in minutes
-session-timeout = 720
-
-# Path to the keystore
-keystore.path = ../../../datastore_server/dist/etc/openBIS.keystore
-
-# Password of the keystore
-keystore.password = changeit
-
-# Key password of the keystore
-keystore.key-password = changeit
-
-# The check interval (in seconds)
-check-interval = 60
-
-# The time-out for clean up work in the shutdown sequence (in seconds).
-# Note that that the maximal time for the shutdown sequence to complete can be as large 
-# as twice this time.
-# Remark: On a network file system, it is not recommended to turn this value to something 
-# lower than 180.
-shutdown-timeout = 180
-
-# If free disk space goes below value defined here, a notification email will be sent.
-# Value must be specified in kilobytes (1048576 = 1024 * 1024 = 1GB). If no high water mark is
-# specified or if value is negative, the system will not be watching.
-highwater-mark = -1
-
-# If a data set is successfully registered it sends out an email to the registrator. 
-# If this property is not specified, no email is sent to the registrator. This property
-# does not affect the mails which are sent, when the data set could not be registered.
-notify-successful-registration = false
-
-# The URL of the openBIS server
-server-url = http://localhost:8888/openbis/openbis
-
-# The username to use when contacting the openBIS server
-username = etlserver
-
-# The password to use when contacting the openBIS server
-password = etlserver
-
-# The base URL for Web client access.
-download-url = https://localhost:8444
-
-# SMTP properties (must start with 'mail' to be considered). 
-# mail.smtp.host = localhost
-# mail.from = datastore_server@localhost
-
-# ---------------- Timing parameters for file system operations on remote shares.
-
-# Time (in seconds) to wait for any file system operation to finish. Operations exceeding this 
-# timeout will be terminated. 
-timeout = 60
-# Number of times that a timed out operation will be tried again (0 means: every file system 
-# operation will only ever be performed once).
-max-retries = 11
-# Time (in seconds) to wait after an operation has been timed out before re-trying.  
-failure-interval = 10 
-
-# The period of no write access that needs to pass before an incoming data item is considered 
-# complete and ready to be processed (in seconds) [default: 300]. 
-# Valid only when auto-detection method is used to determine if an incoming data are ready to be processed.
-quiet-period = 10
-
-
-# Comma separated names of processing threads. Each thread should have configuration properties prefixed with its name.
-# E.g. 'code-extractor' property for the thread 'my-etl' should be specified as 'my-etl.code-extractor'
-inputs = main-thread
-
-# ---------------------------------------------------------------------------
-# main thread configuration
-# ---------------------------------------------------------------------------
-# The directory to watch for incoming data.
-main-thread.incoming-dir = ${data-folder}/incoming
-
-# Determines when the incoming data should be considered complete and ready to be processed.
-# Allowed values: 
-#  - auto-detection - when no write access will be detected for a specified 'quite-period'
-#  - marker-file		- when an appropriate marker file for the data exists. 
-# The default value is 'marker-file'.
-main-thread.incoming-data-completeness-condition = auto-detection
-main-thread.delete-unidentified = true
-# ---------------- Plugin properties
-# The extractor class to use for code extraction
-main-thread.data-set-info-extractor = ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor
-main-thread.data-set-info-extractor.strip-file-extension = true
-main-thread.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
-main-thread.data-set-info-extractor.group-code = TEST
-# Location of file containing data set properties 
-#main-thread.data-set-info-extractor.data-set-properties-file-name = data-set.properties
-
-# The extractor class to use for type extraction
-main-thread.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
-main-thread.type-extractor.file-format-type = PROPRIETARY
-main-thread.type-extractor.locator-type = RELATIVE_LOCATION
-main-thread.type-extractor.data-set-type = FLOW_CELL
-main-thread.type-extractor.is-measured = true
-
-# The storage processor (IStorageProcessor implementation)
-main-thread.storage-processor = ch.ethz.bsse.cisd.dsu.dss.StorageProcessor
-main-thread.storage-processor.processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
-main-thread.storage-processor.flow-lane-drop-box-template = targets/playground/drop-box-{0}
-main-thread.storage-processor.entity-separator = ${data-set-file-name-entity-separator}
-main-thread.storage-processor.transfer.FMI = targets/playground/drop-box-fmi
-main-thread.storage-processor.meta-data-file-prefix = PREFIX_FOR_TSV