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sispub
openbis
Commits
c69cd494
Commit
c69cd494
authored
6 years ago
by
felmer
Browse files
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SSDM-7158: test timestamps and users in integration test
parent
42c07bac
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integration-tests/test_openbis_sync_big.py
+26
-4
26 additions, 4 deletions
integration-tests/test_openbis_sync_big.py
with
26 additions
and
4 deletions
integration-tests/test_openbis_sync_big.py
+
26
−
4
View file @
c69cd494
...
@@ -206,25 +206,39 @@ class TestCase(systemtest.testcase.TestCase):
...
@@ -206,25 +206,39 @@ class TestCase(systemtest.testcase.TestCase):
"
select
'
{0}
'
|| name as name, description, script_type, plugin_type, entity_kind, is_available,
"
"
select
'
{0}
'
|| name as name, description, script_type, plugin_type, entity_kind, is_available,
"
+
"
length(script) as script_length, md5(script) as script_hash
"
+
"
length(script) as script_length, md5(script) as script_hash
"
+
"
from scripts where name like
'
{1}%
'
order by name
"
)
+
"
from scripts where name like
'
{1}%
'
order by name
"
)
self
.
_compareDataBases
(
"
Projects
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select
'
{0}
'
|| s.code as space, p.code as project, p.description,
"
+
"
ur.user_id as registrator, p.registration_timestamp,
"
+
"
um.user_id as modifier, p.modification_timestamp
"
+
"
from projects p join spaces s on p.space_id = s.id
"
+
"
join persons ur on p.pers_id_registerer = ur.id
"
+
"
join persons um on p.pers_id_modifier = um.id
"
+
"
where s.code like
'
{1}%
'
order by s.code, p.code
"
)
self
.
_compareDataBases
(
"
Material properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Material properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select
'
{0}
'
|| m.code as material,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
"
select
'
{0}
'
|| m.code as material,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
+
"
concat(mp.value, cvt.code,
'
{0}
'
|| m2.code) as value
"
+
"
concat(mp.value, cvt.code,
'
{0}
'
|| m2.code) as value,
"
+
"
ur.user_id as registrator, m.registration_timestamp, m.modification_timestamp
"
+
"
from materials m join material_properties mp on mp.mate_id = m.id
"
+
"
from materials m join material_properties mp on mp.mate_id = m.id
"
+
"
left join controlled_vocabulary_terms cvt on mp.cvte_id = cvt.id
"
+
"
left join controlled_vocabulary_terms cvt on mp.cvte_id = cvt.id
"
+
"
left join materials m2 on mp.mate_prop_id = m2.id
"
+
"
left join materials m2 on mp.mate_prop_id = m2.id
"
+
"
join material_type_property_types etpt on mp.mtpt_id = etpt.id
"
+
"
join material_type_property_types etpt on mp.mtpt_id = etpt.id
"
+
"
join material_types t on etpt.maty_id = t.id
"
+
"
join material_types t on etpt.maty_id = t.id
"
+
"
join property_types pt on etpt.prty_id = pt.id
"
+
"
join property_types pt on etpt.prty_id = pt.id
"
+
"
join persons ur on m.pers_id_registerer = ur.id
"
+
"
order by m.code, pt.code
"
)
+
"
order by m.code, pt.code
"
)
self
.
_compareDataBases
(
"
Experiment properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Experiment properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select e.code as experiment,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
"
select e.code as experiment,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
+
"
concat(ep.value, cvt.code, m.code) as value
"
+
"
concat(ep.value, cvt.code, m.code) as value,
"
+
"
ur.user_id as registrator, e.registration_timestamp,
"
+
"
um.user_id as modifier, e.modification_timestamp
"
+
"
from experiments e join experiment_properties ep on ep.expe_id = e.id
"
+
"
from experiments e join experiment_properties ep on ep.expe_id = e.id
"
+
"
left join controlled_vocabulary_terms cvt on ep.cvte_id = cvt.id
"
+
"
left join controlled_vocabulary_terms cvt on ep.cvte_id = cvt.id
"
+
"
left join materials m on ep.mate_prop_id = m.id
"
+
"
left join materials m on ep.mate_prop_id = m.id
"
+
"
join experiment_type_property_types etpt on ep.etpt_id = etpt.id
"
+
"
join experiment_type_property_types etpt on ep.etpt_id = etpt.id
"
+
"
join experiment_types t on etpt.exty_id = t.id
"
+
"
join experiment_types t on etpt.exty_id = t.id
"
+
"
join property_types pt on etpt.prty_id = pt.id
"
+
"
join property_types pt on etpt.prty_id = pt.id
"
+
"
join persons ur on e.pers_id_registerer = ur.id
"
+
"
join persons um on e.pers_id_modifier = um.id
"
+
"
order by e.code, pt.code
"
)
+
"
order by e.code, pt.code
"
)
self
.
_compareDataBases
(
"
Number of samples per experiment
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Number of samples per experiment
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select p.code as project, e.code as experiment, count(*) as number_of_samples
"
"
select p.code as project, e.code as experiment, count(*) as number_of_samples
"
...
@@ -242,12 +256,16 @@ class TestCase(systemtest.testcase.TestCase):
...
@@ -242,12 +256,16 @@ class TestCase(systemtest.testcase.TestCase):
+
"
left join samples s on a.samp_id = s.id order by a.file_name, a.version
"
)
+
"
left join samples s on a.samp_id = s.id order by a.file_name, a.version
"
)
self
.
_compareDataBases
(
"
Samples which are not of type BENCHMARK_OBJECT
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Samples which are not of type BENCHMARK_OBJECT
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select s.code,
'
{0}
'
|| t.code as type, s.perm_id,
'
{0}
'
|| sp.code as space,
"
"
select s.code,
'
{0}
'
|| t.code as type, s.perm_id,
'
{0}
'
|| sp.code as space,
"
+
"
p.code as project, e.code as experiment, sc.code as container
"
+
"
p.code as project, e.code as experiment, sc.code as container,
"
+
"
ur.user_id as registrator, s.registration_timestamp,
"
+
"
um.user_id as modifier, s.modification_timestamp
"
+
"
from samples s join sample_types t on s.saty_id = t.id
"
+
"
from samples s join sample_types t on s.saty_id = t.id
"
+
"
left join spaces sp on s.space_id = sp.id
"
+
"
left join spaces sp on s.space_id = sp.id
"
+
"
left join projects p on s.proj_id = p.id
"
+
"
left join projects p on s.proj_id = p.id
"
+
"
left join experiments e on s.expe_id = e.id
"
+
"
left join experiments e on s.expe_id = e.id
"
+
"
left join samples sc on s.samp_id_part_of = sc.id
"
+
"
left join samples sc on s.samp_id_part_of = sc.id
"
+
"
join persons ur on s.pers_id_registerer = ur.id
"
+
"
join persons um on s.pers_id_modifier = um.id
"
+
"
where t.code <>
'
{1}BENCHMARK_OBJECT
'
and s.code !=
'
DEFAULT
'
order by s.code, s.perm_id
"
)
+
"
where t.code <>
'
{1}BENCHMARK_OBJECT
'
and s.code !=
'
DEFAULT
'
order by s.code, s.perm_id
"
)
self
.
_compareDataBases
(
"
Sample properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Sample properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select s.code as sample,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
"
select s.code as sample,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
...
@@ -271,13 +289,17 @@ class TestCase(systemtest.testcase.TestCase):
...
@@ -271,13 +289,17 @@ class TestCase(systemtest.testcase.TestCase):
+
"
left join experiments e on d.expe_id=e.id order by d.code
"
)
+
"
left join experiments e on d.expe_id=e.id order by d.code
"
)
self
.
_compareDataBases
(
"
Data set properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
self
.
_compareDataBases
(
"
Data set properties
"
,
openbis_data_source
,
openbis_harvester
,
"
openbis
"
,
"
select d.code as data_set,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
"
select d.code as data_set,
'
{0}
'
|| t.code as type,
'
{0}
'
|| pt.code as property,
"
+
"
concat(dp.value, cvt.code, m.code) as value
"
+
"
concat(dp.value, cvt.code, m.code) as value,
"
+
"
ur.user_id as registrator, d.registration_timestamp,
"
+
"
um.user_id as modifier, d.modification_timestamp
"
+
"
from data d join data_set_properties dp on dp.ds_id = d.id
"
+
"
from data d join data_set_properties dp on dp.ds_id = d.id
"
+
"
left join controlled_vocabulary_terms cvt on dp.cvte_id = cvt.id
"
+
"
left join controlled_vocabulary_terms cvt on dp.cvte_id = cvt.id
"
+
"
left join materials m on dp.mate_prop_id = m.id
"
+
"
left join materials m on dp.mate_prop_id = m.id
"
+
"
join data_set_type_property_types dtpt on dp.dstpt_id = dtpt.id
"
+
"
join data_set_type_property_types dtpt on dp.dstpt_id = dtpt.id
"
+
"
join data_set_types t on dtpt.dsty_id = t.id
"
+
"
join data_set_types t on dtpt.dsty_id = t.id
"
+
"
join property_types pt on dtpt.prty_id = pt.id
"
+
"
join property_types pt on dtpt.prty_id = pt.id
"
+
"
join persons ur on d.pers_id_registerer = ur.id
"
+
"
join persons um on d.pers_id_modifier = um.id
"
+
"
order by d.code, pt.code
"
)
+
"
order by d.code, pt.code
"
)
self
.
_compareDataBases
(
"
Data set sizes
"
,
openbis_data_source
,
openbis_harvester
,
"
pathinfo
"
,
self
.
_compareDataBases
(
"
Data set sizes
"
,
openbis_data_source
,
openbis_harvester
,
"
pathinfo
"
,
"
select d.code as data_set, file_name, size_in_bytes
"
"
select d.code as data_set, file_name, size_in_bytes
"
...
...
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