LMS-940 yeastx: resources to support manual tests

SVN: 11391

rtd_yeastx/sourceTest/bash/clean.sh

+#!/bin/bash
+USER=`whoami`
+RES=../../../datastore_server/targets
+
+# ----- restore test database
+
+DB=openbis_yeastx_test
+FILE=yeastx-tests-openbis-database.sql
+
+psql -U postgres -c "drop database $DB;"
+psql -U postgres -c "create database $DB with owner $USER encoding = 'UNICODE';"
+psql -U $USER -d $DB -f $FILE
+
+# ----- clean target directory
+ 
+rm -rf $RES/incoming
+rm -rf $RES/store
+rm -rf $RES/dropbox1
+rm -rf $RES/dropbox2
+ 
+mkdir -p $RES/incoming
+mkdir -p $RES/store
+mkdir -p $RES/dropbox1
+mkdir -p $RES/dropbox2

rtd_yeastx/sourceTest/bash/incoming/different-sample-mapping/file1.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/different-sample-mapping/file2.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/different-sample-mapping/file3.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/different-sample-mapping/index.tsv

+# openbis-user@mailinator.pl
+file_name	sample	group	experiment	project	conversion	datasetcomments
+file1.mzXML	glucose 1	IMSB_ZAMBONI			eicML	xxx1
+file2.mzXML	glucose 2	IMSB_ZAMBONI	e2	bacteria	eicML	xxx2
+file3.mzXML	S32	IMSB_ZAMBONI			eicML	xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-duplicated-mapping/file.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-duplicated-mapping/index.tsv

+# openbis-user@mailinator.pl
+file_name	sample	group	experiment	project	conversion	comment
+file.mzXML	x	IMSB_ZAMBONI			eicML	x
+file.mzXML	x	IMSB_ZAMBONI			eicML	x

rtd_yeastx/sourceTest/bash/incoming/faulty-no-email-specified/index.tsv

+file_name	sample	group	experiment	project	conversion

rtd_yeastx/sourceTest/bash/incoming/faulty-non-unique-mapping/file1.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-non-unique-mapping/file2.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-non-unique-mapping/file3.mzXML

+content
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-non-unique-mapping/index.tsv

+# openbis-user@mailinator.pl
+file_name	sample	group	experiment	project	conversion	comment
+file1.mzXML	any	IMSB_ZAMBONI			eicML	xxx1
+file2.mzXML	any	IMSB_ZAMBONI	e2	bacteria	eicML	xxx2

rtd_yeastx/sourceTest/bash/incoming/faulty-to-many-mapping-files/index1.tsv

+# openbis-user@mailinator.pl
+file_name	sample	group	experiment	project	conversion

rtd_yeastx/sourceTest/bash/incoming/faulty-to-many-mapping-files/index2.tsv

+# openbis-user@mailinator.pl
+file_name	sample	group	experiment	project	conversion

rtd_yeastx/sourceTest/bash/incoming/faulty-unknown-mapping/file1.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-unknown-mapping/file2.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-unknown-mapping/file3.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-unknown-mapping/file4.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file

rtd_yeastx/sourceTest/bash/incoming/faulty-unknown-mapping/file5.mzXML

+file_name	sample	experiment	project	conversion	comment
+unknownFile	x	x	x		x
+file.mzXML	unknown				x
+file3.mzXML	3VCP3				xxx3
\ No newline at end of file