SE-316 extend API with new method and deprecate old ones.

...n/phosphonetx/client/api/v1/IProteomicsDataApiFacade.java

...in/phosphonetx/client/api/v1/ProteomicsDataApiFacade.java

...gin/phosphonetx/server/ProteomicsDataServiceInternal.java

...osphonetx/server/ProteomicsDataServiceInternalLogger.java

...ugin/phosphonetx/server/api/v1/ProteomicsDataService.java

...hosphonetx/server/api/v1/ProteomicsDataServiceLogger.java

...in/phosphonetx/shared/IProteomicsDataServiceInternal.java

...gin/phosphonetx/shared/api/v1/IProteomicsDataService.java

...phosphonetx/server/ProteomicsDataServiceInternalTest.java

.../phosphonetx/server/api/v1/ProteomicsDataServiceTest.java