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Commit 9f006569 authored by felmer's avatar felmer
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removing stuff in data folder which are no longer used. 

SVN: 27367
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installation/resource/installer/data/doc/css/getting-started-with-openBIS.css deleted 100644 → 0
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− 43
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body {
font: 14px "Trebuchet MS", sans-serif;
margin: 40px 0px 10px 20px
}
h1 { font: 16px; }
h4 {
font: 16px;
}
.proteomics {
background-color: #FB8072;
padding-top: 5px;
padding-bottom: 5px;
margin: 15px 500px 15px 0px
}
.screening {
background-color: #8DD3C7;
padding-top: 5px;
padding-bottom: 5px;
margin: 15px 500px 15px 0px
}
.illumina-ngs {
background-color: #80B1D3;
padding-top: 5px;
padding-bottom: 5px;
margin: 15px 500px 15px 0px
}
.sourcecode {
font: 14px "Courier", serif;
background-color: #EEEEEE;
padding-top: 10px;
padding-bottom: 10px;
margin: 15px 500px 15px 0px
}
.text {
margin: 15px 500px 15px 0px
}
\ No newline at end of file
installation/resource/installer/data/doc/getting-started-with-openBIS.html deleted 100644 → 0
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<HTML>
<HEAD>
<LINK type="text/css" rel="stylesheet" href="css/getting-started-with-openBIS.css" />
</HEAD>
<BODY>
<IMG id="openbis-logo" src="images/openBIS_Logo.svg" alt="openBIS" style="position: absolute; top: 10px; right: 20px; height: 80px;"/>
<H3>Start servers</H3>
The installation has completed successfully. To start openBIS launch the following script:
<DIV class="sourcecode">
${INSTALL_BIN_PATH}/allup.sh
</DIV>
After the completion of the above command openBIS will be available at
<A href="https://localhost:8443/openbis">https://localhost:8443/openbis</A>
<BR>
<H3>Importing test data</H3>
<P>
<DIV class="text">
By now you have a fully functional openBIS instance, but it makes little sense
if it has no data in it. To test the data import process please execute the following steps
</DIV>
<ul>
<li>Log into the openBIS web application as 'admin'</li>
<li>Go to Admin -&gt; Spaces. Add a new space 'TEST'</li>
<li>Go to New -&gt; Project. Create a project 'TEST-PROJECT' in space 'TEST'</li>
<li>Go to Admin -&gt; Types -&gt; Experiment Types. Create a new experiment type 'TEST-EXPERIMENT-TYPE'</li>
<li>Select a random file or folder and copy it to <i>incoming-simple</i> as shown below</li>
</ul>
<DIV class="sourcecode">
cp -R &lt;my-file-or-directory&gt; ${DSS_ROOT_DIR}/incoming-simple
</DIV>
This will create a new data set in openBIS. We challenge you to go find it in the running application !
</P>
<BR>
<H3>Customizing openBIS</H3>
<DIV class="text">
In the scientific world there is no one-size-fits-them-all solutions.
Your research data is certainly different from our example data. Luckily, openBIS provides
an easy way to script the import process - the Jython Dropboxes. You can learn how to
create your custom-tailored Jython Dropbox <A HREF="https://wiki-bsse.ethz.ch/display/CISDDoc/Jython+Dropboxes">here</A>.
</DIV>
</BODY>
</HTML>
installation/resource/installer/data/doc/images/openBIS_Logo.svg deleted 100644 → 0
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− 68
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<text transform="matrix(1 0 0 1 46.4854 154.2764)"><tspan x="0" y="0" fill="#010101" font-family="'HelveticaNeue-Bold'" font-size="93.505" letter-spacing="-4">open</tspan><tspan x="204.679" y="0" fill="#231F20" font-family="'HelveticaNeue'" font-size="93.505">BIS</tspan></text>
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installation/resource/installer/data/dropboxes/simple-dropbox.py deleted 100644 → 0
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#! /usr/bin/env python
transaction = service.transaction()
expid = "/TEST/TEST-PROJECT/DEMO-EXP-SIMPLE"
exp = transaction.getExperiment(expid)
if None == exp:
exp = transaction.createNewExperiment(expid, "TEST-EXPERIMENT-TYPE")
dataSet = transaction.createNewDataSet()
dataSet.setDataSetType("UNKNOWN")
dataSet.setExperiment(exp)
transaction.moveFile(incoming.getAbsolutePath(), dataSet)
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