SE-242 remove unused classes

SVN: 15720

screening_tools/source/java/ch/systemsx/cisd/openbis/metadata/ImageAnalysisLMCSplitter.java

@@ -17,10 +17,12 @@
 package ch.systemsx.cisd.openbis.metadata;
 
 import java.io.File;
+import java.io.FileInputStream;
 import java.io.FileNotFoundException;
 import java.io.FileOutputStream;
 import java.io.IOException;
 import java.io.OutputStream;
+import java.nio.charset.Charset;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang.StringUtils;
@@ -34,7 +36,7 @@ import com.csvreader.CsvReader;
  */
 public class ImageAnalysisLMCSplitter
 {
-    private static final String SEPARATOR = ",";
+    private static final char SEPARATOR = ',';
 
     public static void main(String[] args) throws FileNotFoundException, IOException
     {
@@ -44,13 +46,34 @@ public class ImageAnalysisLMCSplitter
                     .println("There should be exactly one parameter: <image-analysis-results-file-path>");
             return;
         }
-        CsvReader reader = ScreeningLibraryTransformer.readFile(args[0]);
+        CsvReader reader = readFile(args[0]);
         boolean ok = reader.readRecord();
         assert ok;
         String[] header = reader.getValues();
         splitPlates(reader, header);
     }
 
+    private static CsvReader readFile(String path) throws FileNotFoundException, IOException
+    {
+        File file = new File(path);
+        if (file.isFile() == false)
+        {
+            error(file + " does not exist or is not a file.");
+        }
+        FileInputStream fileInputStream = new FileInputStream(file);
+
+        CsvReader csvReader = new CsvReader(fileInputStream, Charset.defaultCharset());
+        csvReader.setDelimiter(SEPARATOR);
+        csvReader.setSafetySwitch(false);
+        return csvReader;
+    }
+
+    private static void error(String msg)
+    {
+        System.err.println(msg);
+        System.exit(1);
+    }
+
     private static void splitPlates(CsvReader reader, String[] header) throws IOException,
             FileNotFoundException
     {

screening_tools/source/java/ch/systemsx/cisd/openbis/metadata/ScreeningLibraryTransformer.java

-/*
- * Copyright 2010 ETH Zuerich, CISD
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *      http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-package ch.systemsx.cisd.openbis.metadata;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileNotFoundException;
-import java.io.IOException;
-import java.nio.charset.Charset;
-
-import com.csvreader.CsvReader;
-
-/**
- * Transforms a screening library file and produces files which can be uploaded to openBIS: genes,
- * oligos and plates with wells.
- * 
- * @author Tomasz Pylak
- */
-public class ScreeningLibraryTransformer
-{
-    private final static char SEPARATOR = ',';
-
-    static CsvReader readFile(String path) throws FileNotFoundException, IOException
-    {
-        File file = new File(path);
-        if (file.isFile() == false)
-        {
-            error(file + " does not exist or is not a file.");
-        }
-        FileInputStream fileInputStream = new FileInputStream(file);
-
-        CsvReader csvReader = new CsvReader(fileInputStream, Charset.defaultCharset());
-        csvReader.setDelimiter(SEPARATOR);
-        csvReader.setSafetySwitch(false);
-        return csvReader;
-    }
-
-    private static void error(String msg)
-    {
-        System.err.println(msg);
-        System.exit(1);
-    }
-}