Merge branch 'master' of sissource.ethz.ch:sispub/pybis into develop

src/python/OBis/integration_tests/00_get_config.sh

-#!/bin/bash
-
-cd $1
-obis config

src/python/OBis/integration_tests/00_get_config_global.sh

-#!/bin/bash
-
-obis config -g

src/python/OBis/integration_tests/01_global_config.sh

-#!/bin/bash
-
-if [ -d "~/.obis" ]; then
-  rm -r ~/.obis
-fi
-
-obis config -g openbis_url https://localhost:8443
-obis config -g user admin
-obis config -g data_set_type UNKNOWN
-obis config -g verify_certificates false
-obis config -g hostname `hostname`

src/python/OBis/integration_tests/02_first_commit_1_create_repository.sh

-#!/bin/bash
-
-rm -rf $1/obis_data
-mkdir $1/obis_data && cd $1/obis_data
-obis init data1 && cd data1
-echo content >> file
-obis status

src/python/OBis/integration_tests/02_first_commit_2_commit.sh

-#!/bin/bash
-
-cd $1/obis_data/data1
-
-obis config object_id /DEFAULT/DEFAULT
-obis commit -m 'commit message'

src/python/OBis/integration_tests/03_second_commit_1_commit.sh

-#!/bin/bash
-
-cd $1/obis_data/data1
-
-dd if=/dev/zero of=big_file bs=1000000 count=1
-obis commit -m 'commit message'

src/python/OBis/integration_tests/03_second_commit_2_git_annex_info.sh

-#!/bin/bash
-
-cd $1/obis_data/data1
-
-git annex info big_file

src/python/OBis/integration_tests/04_second_repository.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis init data2 && cd data2
-obis config object_id /DEFAULT/DEFAULT
-echo content >> file
-obis commit -m 'commit message'

src/python/OBis/integration_tests/05_second_external_dms.sh

-#!/bin/bash
-
-mkdir $1/obis_data_b && cd $1/obis_data_b
-obis init data3 && cd data3
-obis config object_id /DEFAULT/DEFAULT
-echo content >> file
-obis commit -m 'commit message'

src/python/OBis/integration_tests/06_error_on_first_commit_1_error.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis init data4 && cd data4
-echo content >> file
-obis commit -m 'commit message'

src/python/OBis/integration_tests/06_error_on_first_commit_2_status.sh

-#!/bin/bash
-
-cd $1/obis_data/data4
-obis status

src/python/OBis/integration_tests/06_error_on_first_commit_3_commit.sh

-#!/bin/bash
-
-cd $1/obis_data/data4
-obis config object_id /DEFAULT/DEFAULT
-obis commit -m 'commit message'

src/python/OBis/integration_tests/07_attach_to_collection.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis init data5 && cd data5
-echo content >> file
-obis config collection_id /DEFAULT/DEFAULT/DEFAULT
-obis commit -m 'msg'
-

src/python/OBis/integration_tests/08_addref_1_success.sh

-#!/bin/bash
-
-cd $1/obis_data
-cp -r data1 data6
-obis addref data6
-

src/python/OBis/integration_tests/08_addref_2_duplicate.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis addref data6
-

src/python/OBis/integration_tests/08_addref_3_non-existent.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis addref data7
-

src/python/OBis/integration_tests/09_local_clone.sh

-#!/bin/bash
-
-data_set_id=$2
-
-cd $1/obis_data_b
-obis clone $data_set_id
-

src/python/OBis/integration_tests/11_init_analysis_1_external.sh

-#!/bin/bash
-
-cd $1/obis_data
-obis init_analysis -p data1 analysis1
-cd analysis1
-obis config object_id /DEFAULT/DEFAULT
-echo content >> file
-obis commit -m 'commit message'
-

src/python/OBis/integration_tests/11_init_analysis_2_internal.sh

-#!/bin/bash
-
-cd $1/obis_data/data1
-obis init_analysis analysis2
-cd analysis2
-obis config object_id /DEFAULT/DEFAULT
-echo content >> file
-obis commit -m 'commit message'
-

src/python/OBis/integration_tests/11_init_analysis_3_git_check_ignore.sh

-#!/bin/bash
-
-cd $1/obis_data/data1
-git check-ignore analysis2
-