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sispub
openbis
Commits
84cf0b17
"README.md" did not exist on "20565a414b32b938d572cea9c1dff2b1e0f77405"
Commit
84cf0b17
authored
14 years ago
by
buczekp
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[LMS-1585] minor: refactoring
SVN: 16664
parent
3677d6be
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openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/SampleDAO.java
+19
-25
19 additions, 25 deletions
.../cisd/openbis/generic/server/dataaccess/db/SampleDAO.java
with
19 additions
and
25 deletions
openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/SampleDAO.java
+
19
−
25
View file @
84cf0b17
...
@@ -533,62 +533,56 @@ public class SampleDAO extends AbstractGenericEntityDAO<SamplePE> implements ISa
...
@@ -533,62 +533,56 @@ public class SampleDAO extends AbstractGenericEntityDAO<SamplePE> implements ISa
public
void
delete
(
final
List
<
TechId
>
sampleIds
,
final
PersonPE
registrator
,
final
String
reason
)
public
void
delete
(
final
List
<
TechId
>
sampleIds
,
final
PersonPE
registrator
,
final
String
reason
)
throws
DataAccessException
throws
DataAccessException
{
{
final
String
sqlPermId
=
"SELECT perm_id FROM samples WHERE id = :s_id"
;
final
String
sqlPermId
=
"SELECT perm_id FROM "
+
TableNames
.
SAMPLES_TABLE
+
" WHERE id = :sId"
;
final
String
sqlDeleteProperties
=
"DELETE FROM "
+
TableNames
.
SAMPLE_PROPERTIES_TABLE
+
" WHERE samp_id = :sId"
;
final
String
sqlDeleteSample
=
"DELETE FROM "
+
TableNames
.
SAMPLES_TABLE
+
" WHERE id = :sId"
;
final
String
sqlInsertEvent
=
final
String
sqlInsertEvent
=
String
String
.
format
(
.
format
(
"INSERT INTO %s (id, event_type, description, reason, pers_id_registerer, entity_type, identifier) "
"INSERT INTO %s (id, event_type, description, reason, pers_id_registerer, entity_type, identifier) "
+
"VALUES (nextval('%s'), :eventType, :description, :reason, :registratorId, :entityType, :identifier)"
,
+
"VALUES (nextval('%s'), :eventType, :description, :reason, :registratorId, :entityType, :identifier)"
,
TableNames
.
EVENTS_TABLE
,
SequenceNames
.
EVENT_SEQUENCE
);
TableNames
.
EVENTS_TABLE
,
SequenceNames
.
EVENT_SEQUENCE
);
final
String
sqlDeleteProperties
=
"DELETE FROM sample_properties WHERE samp_id = :s_id"
;
final
String
sqlDeleteSample
=
"DELETE FROM samples WHERE id = :s_id"
;
executeStatelessAction
(
new
StatelessHibernateCallback
()
executeStatelessAction
(
new
StatelessHibernateCallback
()
{
{
public
Object
doInStatelessSession
(
StatelessSession
session
)
public
Object
doInStatelessSession
(
StatelessSession
session
)
{
{
final
SQLQuery
sqlQueryPermId
=
session
.
createSQLQuery
(
sqlPermId
);
final
SQLQuery
sqlQueryPermId
=
session
.
createSQLQuery
(
sqlPermId
);
final
SQLQuery
sqlQueryDeleteProperties
=
session
.
createSQLQuery
(
sqlDeleteProperties
);
final
SQLQuery
sqlQueryDeleteSample
=
session
.
createSQLQuery
(
sqlDeleteSample
);
final
SQLQuery
sqlQueryInsertEvent
=
session
.
createSQLQuery
(
sqlInsertEvent
);
final
SQLQuery
sqlQueryInsertEvent
=
session
.
createSQLQuery
(
sqlInsertEvent
);
sqlQueryInsertEvent
.
setParameter
(
"eventType"
,
EventType
.
DELETION
.
name
());
sqlQueryInsertEvent
.
setParameter
(
"eventType"
,
EventType
.
DELETION
.
name
());
sqlQueryInsertEvent
.
setParameter
(
"reason"
,
reason
);
sqlQueryInsertEvent
.
setParameter
(
"reason"
,
reason
);
sqlQueryInsertEvent
.
setParameter
(
"registratorId"
,
registrator
.
getId
());
sqlQueryInsertEvent
.
setParameter
(
"registratorId"
,
registrator
.
getId
());
sqlQueryInsertEvent
.
setParameter
(
"entityType"
,
EntityType
.
SAMPLE
.
name
());
sqlQueryInsertEvent
.
setParameter
(
"entityType"
,
EntityType
.
SAMPLE
.
name
());
final
SQLQuery
sqlQueryDeleteProperties
=
session
.
createSQLQuery
(
sqlDeleteProperties
);
final
SQLQuery
sqlQueryDeleteSample
=
session
.
createSQLQuery
(
sqlDeleteSample
);
int
counter
=
0
;
int
counter
=
0
;
// insertion of events is separated for better performance debugging
List
<
String
>
permIds
=
new
ArrayList
<
String
>();
for
(
TechId
techId
:
sampleIds
)
for
(
TechId
techId
:
sampleIds
)
{
{
sqlQueryPermId
.
setParameter
(
"s
_i
d"
,
techId
.
getId
());
sqlQueryPermId
.
setParameter
(
"s
I
d"
,
techId
.
getId
());
final
String
permIdOrNull
=
tryGetEntity
(
sqlQueryPermId
.
uniqueResult
());
final
String
permIdOrNull
=
tryGetEntity
(
sqlQueryPermId
.
uniqueResult
());
if
(
permIdOrNull
!=
null
)
if
(
permIdOrNull
!=
null
)
{
{
permIds
.
add
(
permIdOrNull
);
// delete properties
sqlQueryDeleteProperties
.
setParameter
(
"s
_i
d"
,
techId
.
getId
());
sqlQueryDeleteProperties
.
setParameter
(
"s
I
d"
,
techId
.
getId
());
sqlQueryDeleteProperties
.
executeUpdate
();
sqlQueryDeleteProperties
.
executeUpdate
();
sqlQueryDeleteSample
.
setParameter
(
"s_id"
,
techId
.
getId
());
// delete sample
sqlQueryDeleteSample
.
setParameter
(
"sId"
,
techId
.
getId
());
sqlQueryDeleteSample
.
executeUpdate
();
sqlQueryDeleteSample
.
executeUpdate
();
if
(++
counter
%
100
==
0
)
// create event
sqlQueryInsertEvent
.
setParameter
(
"description"
,
permIdOrNull
);
sqlQueryInsertEvent
.
setParameter
(
"identifier"
,
permIdOrNull
);
sqlQueryInsertEvent
.
executeUpdate
();
if
(++
counter
%
1000
==
0
)
{
{
operationLog
.
info
(
String
.
format
(
"%d samples have been deleted..."
,
operationLog
.
info
(
String
.
format
(
"%d samples have been deleted..."
,
counter
));
counter
));
}
}
}
}
}
}
counter
=
0
;
for
(
String
permId
:
permIds
)
{
sqlQueryInsertEvent
.
setParameter
(
"description"
,
permId
);
sqlQueryInsertEvent
.
setParameter
(
"identifier"
,
permId
);
sqlQueryInsertEvent
.
executeUpdate
();
if
(++
counter
%
100
==
0
)
{
operationLog
.
info
(
String
.
format
(
"%d events have been created..."
,
counter
));
}
}
return
null
;
return
null
;
}
}
});
});
...
...
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